The program annotates low-coverage and high-coverage regions of sequences in fasta format
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Updated
Mar 18, 2026 - Python
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low-coverage
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PalaeoKin is a lightweight ancient-DNA pipeline for estimating pairwise relatedness from mapped BAMs at low/uneven coverage. It wraps ANGSD + NgsRelate (KING-robust kinship, R0/R1) and samtools, producing a clear summary plus PDF/SVG QC plots, with optional downsampling and allele-balance/mixture diagnostics.
python bash bioinformatics bam population-genetics kinship relatedness ancient-dna angsd low-coverage palaeogenomics hakai-institute archaeogenomics ngsrelate
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Jun 11, 2026 - Shell
lcWGS/ANGSD pipeline behind the CJFAS manuscript on Atlantic-Arctic introgression and fine-scale structure in anadromous Arctic charr (Kivalliq, Nunavut)
population-genomics nunavut fisheries-management introgression angsd low-coverage arctic-char salvelinus-alpinus
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Jul 17, 2026 - R
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