fasterq-dump
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Python wrapper created to help download metagenomic data from SRA or ENA databases
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Aug 19, 2022 - Python
This repository contains the code pipeline I developed for Next Generation Sequencing (NGS) analysis during my internship at CSIR-IGIB, New Delhi. The project was completed under the guidance of Mr. Sunil Nagpal and Dr. Bhupesh Taneja. For detailed instructions and a better understanding of pipeline, please refer to the README.md file.
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Oct 7, 2024 - Shell
A contract-driven, SLURM-native HPC pipeline for deterministic conversion of SRA archives to FASTQ, featuring strict preflight validation, reproducible tool installation, and restart-safe, per-sample execution.
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Jun 17, 2026 - Shell
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