🏗️ Statistical models for biomolecular dynamics 🏗️
WebGL protein viewer
PyRod - Tracing water molecules in molecular dynamics simulations
Detect and characterize binding pockets from molecular simulations.
Solvation Structure and Thermodynamic Mapping
End-To-End Molecular Dynamics (MD) Engine using PyTorch
MD pharmacophores and virtual screening
A pocket volume analyzer for use in protein modeling.
Differentiable, Hardware Accelerated, Molecular Dynamics
Public development project of the LAMMPS MD software package
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
OpenMM is a toolkit for molecular simulation using high performance GPU code.
🚂 Python API for Emma's Markov Model Algorithms 🚂
A comprehensive macromolecular library
Powerful, efficient particle trajectory analysis in scientific Python.
Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
Dynamic pharmacophore modeling of molecular interactions
Fast and All atom Protein-Ligand Interaction Profiler
An open library for the analysis of molecular dynamics trajectories
MDAnalysis is a Python library to analyze molecular dynamics simulations.
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