bio-computing

Tokenizer for encoding/decoding dna sequences

This is a stochastic simulator for DNA chemcial reaction networks developed primarly by Marceline Sorensen, based on the idea of Marc Riedel's Alea simulator. It's a complete rewrite in rust aiming to implement better detection of stable state end conditions, user friendly input file syntax, and multithreaded execution.

"An open-source library bridging biology and software engineering. Translating nature's 3.8 billion years of R&D into ready-to-use algorithms for optimization, generative design, and distributed systems."

Open operating-system specification for biological neural networks — cortical organoids, MEA-coupled cultures, and their in-silico emulators. v0.1 draft with working L0 reference emulator (Izhikevich + Hodgkin-Huxley + STDP + migration).

A high-performance Python implementation of Dawkin's Weasel experiment. Uses multiprocessing and matplotlib to visualise how different mutation rates affect evolutionary convergence speed.

Architecture informatique post-silicium fusionnant l'intelligence distribuée du mycélium, la frustration géométrique des verres de spin et les modèles de sécurité "zombie" inspirés de l'Ophiocordyceps pour créer des réseaux auto-cicatrisants et résilients

An interactive simulation environment for cultivating biological neural networks, studying organoid intelligence, and testing organoid-AI closed-loop learning.

Cadre unifié traitant le Quorum Sensing biologique comme une transition de phase contrôlée par la densité via la physique de la matière active et la théorie MIPS.

A synthetic biology computing framework and structural logic compiler transforming E. coli DNA arrays into addressable, non-volatile CRISPRi-clamped storage registers.

Mercy Cube v1.0 — Open, Real, Ready Stackable, 7-watt, offline Grok shard. 2025 physics, no hype.