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JSON schema: Slamseq

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#55 In nf-core/slamseq;

· jen-reeve opened on Mar 25, 2025

no deseq2 folder in the results directory

Status: Open.

#47 In nf-core/slamseq;

· orca118 opened on Dec 6, 2023

Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are not integer

Status: Open.

#39 In nf-core/slamseq;

· mattheatley opened on Dec 5, 2022

gtf2bed.py: not enough values to unpack (expected 9, got 1)

Status: Open.

#32 In nf-core/slamseq;

· yadavbha opened on Jan 27, 2022

gtf2bed.py : attributes longer than 2 elements

Status: Open.

#30 In nf-core/slamseq;

· elabaronne opened on Dec 7, 2021

specify the “--skip_trimming true ” parameter caused No such variable: Exception evaluating property 'reads' for nextflow.util.ArrayTuple error

Status: Open.

#20 In nf-core/slamseq;

· libingnan11 opened on Mar 9, 2021

gtf2bed.py py2->py3 conversation error

Status: Open.

#16 In nf-core/slamseq;

· genio0815 opened on Oct 7, 2020

Exception evaluating property 'reads' for nextflow.util.ArrayTuple

Status: Open.

#15 In nf-core/slamseq;

· drowsygoat opened on Sep 26, 2020

read_length = 50 in nextflow.config is problematic

Status: Open.

#14 In nf-core/slamseq;

· sisterdot opened on Sep 4, 2020

gtf2bed.py iGenomes incompatibility

Status: Open.

#13 In nf-core/slamseq;

· sisterdot opened on Sep 4, 2020