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Pull requests: nf-core/modules

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Pull requests list

migrate leviosam2/lift module to topic channels
#12000 opened Jun 13, 2026 by Anifowak Contributor Loading…
9 of 14 tasks
1
4
Swap vg modules to topics size/m
#11998 opened Jun 13, 2026 by SPPearce Contributor Loading…
Swap sambamba to topics and stub size/m
#11997 opened Jun 13, 2026 by SPPearce Contributor Loading…
Feat: SEQKIT_* update versions, snapshots + cleanup
#11992 opened Jun 12, 2026 by maxulysse Member Loading…
17 tasks
1
Fix centrifuger output naming to avoid filename collisions in taxprof…
#11990 opened Jun 12, 2026 by haris18s Contributor Loading…
Add new component: gridss/preprocess Ready for Review
#11988 opened Jun 12, 2026 by imsarath Contributor Loading…
13 of 17 tasks
1
@imsarath
Add HDL rg module
#11971 opened Jun 10, 2026 by lyh970817 Contributor Loading…
14 tasks done
Add HDL h2 module
#11970 opened Jun 10, 2026 by lyh970817 Contributor Loading…
14 tasks done
Add plink_gwas_regenie subworkflow
#11938 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add plink_fit_regenie subworkflow
#11937 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add new component cnvkit/segment Ready for Review
#11936 opened Jun 9, 2026 by aadecock Contributor Loading…
12 of 17 tasks
1
@aadecock
2
Add new refinegems nf-core module with config-generation interface
#11935 opened Jun 9, 2026 by Copilot AI • Draft
1
@brovolia
POC Use of nfcore.utils for R templace
#11933 opened Jun 9, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
4
New module savana/cna Ready for Review
#11926 opened Jun 8, 2026 by manascripts Member Loading…
11 of 17 tasks
2
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
@dbaku42
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
2
New module savana/to Ready for Review
#11849 opened Jun 3, 2026 by manascripts Member Loading…
11 of 14 tasks
9
Update to topic isoseq3/tag
#11844 opened Jun 3, 2026 by bhargava-morampalli Contributor Loading…
17 tasks
1
@bhargava-morampalli
3
updated stringtie Ready for Review size/xl
#11832 opened Jun 2, 2026 by khersameesh24 Contributor Loading…
3 tasks
1
2
New module baysor Ready for Review size/l
#11790 opened May 29, 2026 by khersameesh24 Contributor Loading…
4 tasks
1
14
Add varnet (https://github.com/skandlab/VarNet)
#11787 opened May 29, 2026 by kiranchari Loading…
1 task
32
Add regenie/runl1 module Ready for Review
#11768 opened May 26, 2026 by lyh970817 Contributor Loading…
14 tasks done
1
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
23
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