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Pull requests: loculus-project/loculus

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Pull requests list

feat: explain how to get original data on bulk revision page preview Triggers a deployment to argocd website Tasks related to the web application
#7153 opened Aug 24, 2026 by theosanderson Member Loading…
8
Compress submission uploads with zstd in the browser preview Triggers a deployment to argocd website Tasks related to the web application
#7152 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
feat(deposition): add tests that ensure sqlAlchemy db table models do… deposition related to ENA/INSDC deposition
#7151 opened Aug 24, 2026 by anna-parker Contributor • Draft
2 of 3 tasks
8
chore(ci): make GitHub workflow job names unique and informative github_actions Pull requests that update GitHub Actions code
#7150 opened Aug 24, 2026 by corneliusroemer Contributor • Draft
feat(raw-reads-processing): update threshold
#7148 opened Aug 24, 2026 by anna-parker Contributor Loading…
2
fix(ingest): don't retry ingest jobs, submit in smaller batches, raise time limit deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline
#7146 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
4
chore(backend): silence Byte Buddy agent and Unsafe warnings in tests backend related to the loculus backend component review please PR waiting for final review
#7145 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
1
6
chore(backend): run tests with compact object headers, as production does backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure review please PR waiting for final review
#7144 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
3
chore(backend): silence JNA restricted-method warning in tests backend related to the loculus backend component review please PR waiting for final review
#7143 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
3
chore(backend): migrate HTTP 422 title from UNPROCESSABLE_ENTITY to UNPROCESSABLE CONTENT (per RFC 9110) backend related to the loculus backend component preview Triggers a deployment to argocd review please PR waiting for final review
#7142 opened Aug 24, 2026 by corneliusroemer-agent Collaborator Loading…
6
feat(backend): Generate db migrations from exposed table definitions backend related to the loculus backend component
#7141 opened Aug 24, 2026 by tombch Collaborator • Draft
3 tasks
test(backend): assert Exposed declarations match the migrated schema backend related to the loculus backend component
#7139 opened Aug 24, 2026 by corneliusroemer-agent Collaborator • Draft
1
feat!(backend): prevent db state divergence between truth and code backend related to the loculus backend component update_db_schema
#7138 opened Aug 24, 2026 by anna-parker Contributor • Draft
2 of 3 tasks
1
14
fix(backend): discard processed data whose sequence entry was edited backend related to the loculus backend component
#7137 opened Aug 23, 2026 by corneliusroemer-agent Collaborator • Draft
1
12
fix(deployment): move serversTransport annotation to Services deployment Code changes targetting the deployment infrastructure
#7135 opened Aug 23, 2026 by corneliusroemer-agent Collaborator Loading…
2
doc(kb): add spooling investigation writeup
#7134 opened Aug 23, 2026 by clonder Contributor Loading…
2 of 3 tasks
6
perf(backend): claim and store preprocessing results one statement per batch backend related to the loculus backend component performance
#7133 opened Aug 21, 2026 by clonder Contributor Loading…
3 tasks done
7
fix(website): stop reporting a replaced file as uploaded while it's requesting upload url bug Something isn't working website Tasks related to the web application
#7132 opened Aug 21, 2026 by corneliusroemer-agent Collaborator Loading…
10
feat(raw-reads-processing): update deacon index to mask high qualityPPX consensus sequence k-mers
#7127 opened Aug 21, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
1
11
fix(website): Fix applying file mappings for compressed metadata files website Tasks related to the web application
#7119 opened Aug 20, 2026 by tombch Collaborator • Draft
3 tasks
1
1
[Mirror] Kubernetes/securitycontexts deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#7117 opened Aug 19, 2026 by chaoran-chen Member Loading…
9
[Mirror] Kubernetes/custom container registries preview Triggers a deployment to argocd
#7116 opened Aug 19, 2026 by chaoran-chen Member Loading…
8
fix(backend): don't leak Postgres internals in duplicate submissionId error backend related to the loculus backend component
#7109 opened Aug 19, 2026 by corneliusroemer-agent Collaborator • Draft
1
fix(website): report unreadable metadata files instead of hanging on "still being processed" website Tasks related to the web application
#7108 opened Aug 19, 2026 by corneliusroemer-agent Collaborator • Draft
1
fix(website): stop rendering "undefined" when a problem detail has no detail website Tasks related to the web application
#7107 opened Aug 19, 2026 by corneliusroemer-agent Collaborator • Draft
1
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