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  1. DNA_replication_model DNA_replication_model Public

    Toolkit for analyzing DNA replication timing, origin firing rates, and genomic stability across cell lines and chromosome regions. It includes functions for data processing and visualization for wh…

    Jupyter Notebook

  2. Pfuderer/ORILINX Pfuderer/ORILINX Public

    A genome language model to detect origin of replication sequences across multiple species.

    Python 6

  3. MultiLayer-NotchDelta MultiLayer-NotchDelta Public

    Toolkit for modelling and analysing 3D Notch-Delta signalling in multi-layered epithelial tissues, aimed at exploring how cell geometry and depth affect lateral inhibition.

    Python 1

  4. RepliCanvas RepliCanvas Public

    A broswer-based studio for drawing and animating DNA replication

    JavaScript