Segata Lab
The computational metagenomics lab at the Dep. CIBIO, University of Trento
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- NW_meta_analysis Public
Scripts and analyses supporting "Gut microbial strain-level genetic and functional diversity loss in the gut microbiome of westernized populations"
- preprocessing Public
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
- inverse_var_weight Public
Object caller for stochastically dependent and independent effect-size and meta-analysis of correlations in Python
- CRC_staging_analysis Public
- metaml Public
- diet_habits_microbiome_association Public
Repository with the command lines used to generate the microbiome meta-analyses and the microbiome machine learning in the vegetarian, vegan, omnivore diet comparison paper
- lefse Public
- MASTER-WP5-pipelines Public
- panphlan Public
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
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