GEOPY-2731

[domfournier]

No description provided.

[Copilot]

Pull request overview

This PR migrates geoapps-utils away from geoh5py.ui_json.InputFile toward the newer geoh5py.ui_json.UIJson API, updating the core driver startup flow, UIJson/group execution utilities, parameter sweep generation/driver logic, and the test suite to match the new serialization and file-writing behavior.

Changes:

• Replace InputFile usage with UIJson in runtime code paths (Driver.start, run_uijson_group, ui.json copying, param sweep generation/execution).
• Remove the legacy BaseParams implementation and update tests to validate the new UIJson-based behavior.
• Update the base UI JSON template and adjust dependency pinning/lock files for the updated geoh5py API.

Reviewed changes

Copilot reviewed 28 out of 28 changed files in this pull request and generated 4 comments.

Show a summary per file

File	Description
tests/uijson_run_test.py	Refactors tests to use a shared uijson_path fixture and new output naming.
tests/param_sweeps/generate_test.py	Updates test to serialize via options.ui_json.
tests/param_sweeps/driver_test.py	Updates test to serialize via options.ui_json.
tests/dataclass_test.py	Adjusts assertions and updates writing via params.ui_json.write(...).
tests/conftest.py	Introduces uijson_path fixture and updates test driver/options scaffolding.
tests/base_test.py	Aligns tests to UIJson serialization and new default-ui-json behavior.
pyproject.toml	Switches geoh5py dependency rev to feature/uijson.
geoapps_utils/run.py	Updates out-group execution and ui.json copying to use UIJson.
geoapps_utils/param_sweeps/generate.py	Reworks sweep-file generation around UIJson + base template.
geoapps_utils/param_sweeps/driver.py	Updates sweep driver to read/write UIJson and close workspace before copying.
geoapps_utils/driver/params.py	Removes legacy BaseParams implementation.
geoapps_utils/base.py	Updates Driver and Options to use UIJson as the primary representation.
geoapps_utils-assets/uijson/base.ui.json	Expands out_group into a full form object.
environments/py-3.14-win-64.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.14-win-64-dev.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.14-linux-64.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.14-linux-64-dev.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.13-win-64.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.13-win-64-dev.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.13-linux-64.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.13-linux-64-dev.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.12-win-64.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.12-win-64-dev.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.12-linux-64.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.
environments/py-3.12-linux-64-dev.conda.lock.yml	Refreshes locked dependency set for new geoh5py rev.

---

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.

[codecov]

Codecov Report

❌ Patch coverage is 79.54545% with 27 lines in your changes missing coverage. Please review.
✅ Project coverage is 84.12%. Comparing base (2deafcc) to head (bba9c35).

Files with missing lines	Patch %	Lines
geoapps_utils/base.py	72.72%	17 Missing and 4 partials ⚠️
geoapps_utils/run.py	86.48%	2 Missing and 3 partials ⚠️
geoapps_utils/param_sweeps/generate.py	91.66%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #213      +/-   ##
===========================================
- Coverage    85.95%   84.12%   -1.83%     
===========================================
  Files           19       18       -1     
  Lines         1196      945     -251     
  Branches       155      123      -32     
===========================================
- Hits          1028      795     -233     
+ Misses         127      113      -14     
+ Partials        41       37       -4     

Files with missing lines	Coverage Δ
geoapps_utils/param_sweeps/driver.py	81.60% <100.00%> (-0.21%)	⬇️
geoapps_utils/param_sweeps/generate.py	78.94% <91.66%> (+4.58%)	⬆️
geoapps_utils/run.py	88.34% <86.48%> (-4.25%)	⬇️
geoapps_utils/base.py	76.50% <72.72%> (-15.52%)	⬇️

... and 2 files with indirect coverage changes

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.