diff --git a/Spatio-Temporal-Evolution/checkpoints/estgel/config.json b/Spatio-Temporal-Evolution/checkpoints/estgel/config.json
new file mode 100644
index 0000000..5fa9b8c
--- /dev/null
+++ b/Spatio-Temporal-Evolution/checkpoints/estgel/config.json
@@ -0,0 +1,19 @@
+{
+ "processed_dir": "D:\\Github\\DevoGraph\\Spatio-Temporal-Evolution\\Dataset\\processed\\by_embryo",
+ "labels_csv": null,
+ "epochs": 5,
+ "lr": 0.0001,
+ "weight_decay": 0.01,
+ "val_ratio": 0.2,
+ "seed": 42,
+ "max_samples": null,
+ "max_timesteps": 6,
+ "time_stride": 25,
+ "window_size": 20,
+ "bptt_truncation": 8,
+ "K": 11,
+ "max_nodes": 2500,
+ "dropout": 0.5,
+ "checkpoint_dir": "D:\\Github\\DevoGraph\\Spatio-Temporal-Evolution\\checkpoints\\estgel",
+ "device": "auto"
+}
\ No newline at end of file
diff --git a/Spatio-Temporal-Evolution/checkpoints/estgel/confusion_matrix.png b/Spatio-Temporal-Evolution/checkpoints/estgel/confusion_matrix.png
new file mode 100644
index 0000000..dc0ec58
Binary files /dev/null and b/Spatio-Temporal-Evolution/checkpoints/estgel/confusion_matrix.png differ
diff --git a/Spatio-Temporal-Evolution/checkpoints/estgel/explainability_comparison.png b/Spatio-Temporal-Evolution/checkpoints/estgel/explainability_comparison.png
new file mode 100644
index 0000000..328a864
Binary files /dev/null and b/Spatio-Temporal-Evolution/checkpoints/estgel/explainability_comparison.png differ
diff --git a/Spatio-Temporal-Evolution/checkpoints/estgel/explainability_report.json b/Spatio-Temporal-Evolution/checkpoints/estgel/explainability_report.json
new file mode 100644
index 0000000..9dacef8
--- /dev/null
+++ b/Spatio-Temporal-Evolution/checkpoints/estgel/explainability_report.json
@@ -0,0 +1,2365 @@
+{
+ "wt_embryo": {
+ "filename": "CD011505_end1red_bright.npz",
+ "timesteps": [
+ 30,
+ 60,
+ 90,
+ 120,
+ 150,
+ 180
+ ],
+ "data": [
+ {
+ "timestep": 30,
+ "attentions": {
+ "ABal->ABala": 1.0,
+ "ABal->ABalp": 1.0,
+ "ABar->ABara": 0.9123597741127014,
+ "ABar->ABarp": 0.9123597741127014,
+ "ABpl->ABpla": 0.9123597741127014,
+ "ABpl->ABplp": 0.9123597741127014,
+ "ABpr->ABpra": 0.9123597741127014,
+ "ABpr->ABprp": 0.9123597741127014
+ }
+ },
+ {
+ "timestep": 60,
+ "attentions": {
+ "ABala->ABalaa": 0.9123597741127014,
+ "ABala->ABalap": 0.9123597741127014,
+ "ABalp->ABalpa": 0.9123597741127014,
+ "ABalp->ABalpp": 0.9123597741127014,
+ "ABara->ABaraa": 0.9123597741127014,
+ "ABara->ABarap": 0.9123597741127014,
+ "ABarp->ABarpa": 0.9123597741127014,
+ "ABarp->ABarpp": 0.9123597741127014,
+ "ABpla->ABplaa": 0.9123597741127014,
+ "ABpla->ABplap": 0.9123597741127014,
+ "ABplp->ABplpa": 0.9123597741127014,
+ "ABplp->ABplpp": 0.9123597741127014,
+ "ABpra->ABpraa": 0.9123597741127014,
+ "ABpra->ABprap": 0.9123597741127014,
+ "ABprp->ABprpa": 0.9123597741127014,
+ "ABprp->ABprpp": 0.9123597741127014,
+ "MSa->MSaa": 0.9123597741127014,
+ "MSa->MSap": 0.9123597741127014,
+ "MSp->MSpa": 0.9123597741127014,
+ "MSp->MSpp": 0.9123597741127014,
+ "E->Ea": 0.9123597741127014,
+ "E->Ep": 0.9123597741127014,
+ "C->Ca": 0.9123597741127014,
+ "C->Cp": 0.9123597741127014
+ }
+ },
+ {
+ "timestep": 90,
+ "attentions": {
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+ "ABalppa->ABalpap": 1.0,
+ "ABarpap->MSpaa": 1.0,
+ "MSpaa->ABarpap": 1.0,
+ "Epr->Cpa": 1.0,
+ "Cpa->Epr": 1.0,
+ "Cpp->Dp": 0.9123597741127014,
+ "Dp->Cpp": 0.9123597741127014,
+ "ABalaa->ABalaaa": 0.9123597741127014,
+ "ABalaa->ABalaap": 0.8292930126190186,
+ "ABalap->ABalapa": 0.9123597741127014,
+ "ABalap->ABalapp": 0.9123597741127014,
+ "ABalpa->ABalpaa": 0.9123597741127014,
+ "ABalpa->ABalpap": 0.9123597741127014,
+ "ABalpp->ABalppa": 0.9123597741127014,
+ "ABalpp->ABalppp": 0.9123597741127014,
+ "ABaraa->ABaraaa": 0.9123597741127014,
+ "ABaraa->ABaraap": 0.9123597741127014,
+ "ABarap->ABarapa": 0.9123597741127014,
+ "ABarap->ABarapp": 0.9123597741127014,
+ "ABarpa->ABarpaa": 0.9123597741127014,
+ "ABarpa->ABarpap": 0.9123597741127014,
+ "ABarpp->ABarppa": 0.9123597741127014,
+ "ABarpp->ABarppp": 0.9123597741127014,
+ "ABplaa->ABplaaa": 0.9123597741127014,
+ "ABplaa->ABplaap": 0.9123597741127014,
+ "ABplap->ABplapa": 0.9123597741127014,
+ "ABplap->ABplapp": 0.9123597741127014,
+ "ABplpa->ABplpaa": 0.9123597741127014,
+ "ABplpa->ABplpap": 0.9123597741127014,
+ "ABplpp->ABplppa": 0.9123597741127014,
+ "ABplpp->ABplppp": 0.9123597741127014,
+ "ABpraa->ABpraaa": 0.9123597741127014,
+ "ABpraa->ABpraap": 0.9123597741127014,
+ "ABprap->ABprapa": 0.9123597741127014,
+ "ABprap->ABprapp": 0.9123597741127014,
+ "ABprpa->ABprpaa": 0.9123597741127014,
+ "ABprpa->ABprpap": 0.9123597741127014,
+ "ABprpp->ABprppa": 0.9123597741127014,
+ "ABprpp->ABprppp": 0.9123597741127014,
+ "MSaa->MSaaa": 0.9123597741127014,
+ "MSaa->MSaap": 0.9123597741127014,
+ "MSap->MSapa": 0.8292930126190186,
+ "MSap->MSapp": 0.9123597741127014,
+ "MSpa->MSpaa": 0.9123597741127014,
+ "MSpa->MSpap": 0.8292930126190186,
+ "MSpp->MSppa": 0.9123597741127014,
+ "MSpp->MSppp": 0.9123597741127014,
+ "Ea->Eal": 0.9123597741127014,
+ "Ea->Ear": 0.8292930126190186,
+ "Ep->Epl": 0.9123597741127014,
+ "Ep->Epr": 0.9123597741127014,
+ "Ca->Caa": 0.8292930126190186,
+ "Ca->Cap": 0.9123597741127014,
+ "Cp->Cpa": 0.9123597741127014,
+ "Cp->Cpp": 0.9123597741127014,
+ "D->Da": 0.9123597741127014,
+ "D->Dp": 0.9123597741127014
+ }
+ },
+ {
+ "timestep": 120,
+ "attentions": {
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+ "ABplapaa->ABalaapp": 0.9123597741127014,
+ "ABalapap->ABaraapa": 0.9123597741127014,
+ "ABaraapa->ABalapap": 0.9123597741127014,
+ "ABalappp->ABaraapp": 0.9123597741127014,
+ "ABaraapp->ABalappp": 0.9123597741127014,
+ "ABalappp->ABplapaa": 1.0,
+ "ABplapaa->ABalappp": 1.0,
+ "ABarappp->ABarpppa": 1.0,
+ "ABarpppa->ABarappp": 1.0,
+ "ABplappa->MSaapp": 0.9123597741127014,
+ "MSaapp->ABplappa": 0.9123597741127014,
+ "ABplappp->MSapp": 0.9123597741127014,
+ "MSapp->ABplappp": 0.9123597741127014,
+ "ABpraapp->ABprapaa": 0.9123597741127014,
+ "ABprapaa->ABpraapp": 0.9123597741127014,
+ "ABprappp->ABprpppa": 0.9123597741127014,
+ "ABprpppa->ABprappp": 0.9123597741127014,
+ "MSppp->Epr": 0.9123597741127014,
+ "Epr->MSppp": 0.9123597741127014,
+ "ABalaaa->ABalaaaa": 0.9123597741127014,
+ "ABalaaa->ABalaaap": 0.9123597741127014,
+ "ABalaap->ABalaapa": 0.8292930126190186,
+ "ABalaap->ABalaapp": 0.9123597741127014,
+ "ABalapa->ABalapaa": 0.8292930126190186,
+ "ABalapa->ABalapap": 0.9123597741127014,
+ "ABalapp->ABalappa": 0.8292930126190186,
+ "ABalapp->ABalappp": 0.9123597741127014,
+ "ABalpaa->ABalpaaa": 0.8292930126190186,
+ "ABalpaa->ABalpaap": 0.8292930126190186,
+ "ABalpap->ABalpapa": 0.9123597741127014,
+ "ABalpap->ABalpapp": 0.9123597741127014,
+ "ABalppa->ABalppaa": 0.9123597741127014,
+ "ABalppa->ABalppap": 0.9123597741127014,
+ "ABalppp->ABalpppa": 0.9123597741127014,
+ "ABalppp->ABalpppp": 0.9123597741127014,
+ "ABaraaa->ABaraaaa": 0.8292930126190186,
+ "ABaraaa->ABaraaap": 0.8292930126190186,
+ "ABaraap->ABaraapa": 0.9123597741127014,
+ "ABaraap->ABaraapp": 0.9123597741127014,
+ "ABarapa->ABarapaa": 0.8292930126190186,
+ "ABarapa->ABarapap": 0.8292930126190186,
+ "ABarapp->ABarappa": 0.8292930126190186,
+ "ABarapp->ABarappp": 0.9123597741127014,
+ "ABarpaa->ABarpaaa": 0.8292930126190186,
+ "ABarpaa->ABarpaap": 0.8292930126190186,
+ "ABarpap->ABarpapa": 0.8292930126190186,
+ "ABarpap->ABarpapp": 0.8292930126190186,
+ "ABarppa->ABarppaa": 0.8292930126190186,
+ "ABarppa->ABarppap": 0.8292930126190186,
+ "ABarppp->ABarpppa": 0.9123597741127014,
+ "ABarppp->ABarpppp": 0.8292930126190186,
+ "ABplaaa->ABplaaaa": 0.8292930126190186,
+ "ABplaaa->ABplaaap": 0.8292930126190186,
+ "ABplaap->ABplaapa": 0.8292930126190186,
+ "ABplaap->ABplaapp": 0.8292930126190186,
+ "ABplapa->ABplapaa": 0.9123597741127014,
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+ "ABplapp->ABplappa": 0.9123597741127014,
+ "ABplapp->ABplappp": 0.9123597741127014,
+ "ABplpaa->ABplpaaa": 0.8292930126190186,
+ "ABplpaa->ABplpaap": 0.8292930126190186,
+ "ABplpap->ABplpapa": 0.8292930126190186,
+ "ABplpap->ABplpapp": 0.8292930126190186,
+ "ABplppa->ABplppaa": 0.8292930126190186,
+ "ABplppa->ABplppap": 0.8292930126190186,
+ "ABplppp->ABplpppa": 0.8292930126190186,
+ "ABplppp->ABplpppp": 0.8292930126190186,
+ "ABpraaa->ABpraaaa": 0.8292930126190186,
+ "ABpraaa->ABpraaap": 0.8292930126190186,
+ "ABpraap->ABpraapa": 0.8292930126190186,
+ "ABpraap->ABpraapp": 0.9123597741127014,
+ "ABprapa->ABprapaa": 0.9123597741127014,
+ "ABprapa->ABprapap": 0.8292930126190186,
+ "ABprapp->ABprappa": 0.8292930126190186,
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+ "ABprpaa->ABprpaaa": 0.8292930126190186,
+ "ABprpaa->ABprpaap": 0.8292930126190186,
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+ "ABprpap->ABprpapp": 0.8292930126190186,
+ "ABprppa->ABprppaa": 0.8292930126190186,
+ "ABprppa->ABprppap": 0.8292930126190186,
+ "ABprppp->ABprpppa": 0.9123597741127014,
+ "ABprppp->ABprpppp": 0.8292930126190186,
+ "MSaaa->MSaaaa": 0.8292930126190186,
+ "MSaaa->MSaaap": 0.8292930126190186,
+ "MSaap->MSaapa": 0.8292930126190186,
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+ "MSpa->MSpap": 0.8292930126190186,
+ "MSpp->MSppa": 0.8292930126190186,
+ "MSpp->MSppp": 0.9123597741127014,
+ "Ea->Eal": 0.8292930126190186,
+ "Ea->Ear": 0.8292930126190186,
+ "Ep->Epl": 0.8292930126190186,
+ "Ep->Epr": 0.9123597741127014,
+ "Caa->Caaa": 0.8292930126190186,
+ "Caa->Caap": 0.8292930126190186,
+ "Cap->Capa": 0.8292930126190186,
+ "Cap->Capp": 0.8292930126190186,
+ "Cpa->Cpaa": 0.8292930126190186,
+ "Cpa->Cpap": 0.8292930126190186,
+ "Cpp->Cppa": 0.8292930126190186,
+ "Cpp->Cppp": 0.8292930126190186,
+ "D->Da": 0.8292930126190186,
+ "D->Dp": 0.8292930126190186
+ }
+ },
+ {
+ "timestep": 150,
+ "attentions": {
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+ "ABalaaaar->ABalaaaal": 1.0,
+ "ABalaaaal->ABalpaaaa": 0.9123597741127014,
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+ "ABalaaaar->ABaraaaaa": 0.9123597741127014,
+ "ABaraaaaa->ABalaaaar": 0.9123597741127014,
+ "ABalaaapa->ABalaapaa": 0.8292930126190186,
+ "ABalaapaa->ABalaaapa": 0.8292930126190186,
+ "ABalaaapp->ABalappap": 0.9123597741127014,
+ "ABalappap->ABalaaapp": 0.9123597741127014,
+ "ABalaaapp->ABarapaaa": 0.9123597741127014,
+ "ABarapaaa->ABalaaapp": 0.9123597741127014,
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+ "ABalaappa->ABalaapap": 0.8292930126190186,
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+ "ABalapaaa->MSaaaa": 0.9123597741127014,
+ "MSaaaa->ABalapaaa": 0.9123597741127014,
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+ "MSaaap->ABalapapp": 0.8292930126190186,
+ "ABalappap->ABarapaaa": 0.9123597741127014,
+ "ABarapaaa->ABalappap": 0.9123597741127014,
+ "ABalapppa->ABarpaaap": 0.9123597741127014,
+ "ABarpaaap->ABalapppa": 0.9123597741127014,
+ "ABalpaaap->ABalpaapp": 1.0,
+ "ABalpaapp->ABalpaaap": 1.0,
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+ "ABplaaaaa->ABalpaaap": 0.9123597741127014,
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+ "ABalpapaa->ABalpaapp": 0.9123597741127014,
+ "ABalpaapp->ABplaaaaa": 0.9123597741127014,
+ "ABplaaaaa->ABalpaapp": 0.9123597741127014,
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+ "ABplaaaap->ABalpapap": 0.9123597741127014,
+ "ABalpappp->MSapaa": 0.9123597741127014,
+ "MSapaa->ABalpappp": 0.9123597741127014,
+ "ABalppaa->ABplaaaap": 0.9123597741127014,
+ "ABplaaaap->ABalppaa": 0.9123597741127014,
+ "ABalppapa->ABalpppap": 0.9123597741127014,
+ "ABalpppap->ABalppapa": 0.9123597741127014,
+ "ABalppppa->MSapaa": 0.9123597741127014,
+ "MSapaa->ABalppppa": 0.9123597741127014,
+ "ABalppppp->MSapap": 0.9123597741127014,
+ "MSapap->ABalppppp": 0.9123597741127014,
+ "ABaraapaa->MSaaaa": 0.9123597741127014,
+ "MSaaaa->ABaraapaa": 0.9123597741127014,
+ "ABaraappp->MSpaap": 0.8292930126190186,
+ "MSpaap->ABaraappp": 0.8292930126190186,
+ "ABarapapp->Eara": 0.9123597741127014,
+ "Eara->ABarapapp": 0.9123597741127014,
+ "ABarapppa->ABpraaapp": 0.8292930126190186,
+ "ABpraaapp->ABarapppa": 0.8292930126190186,
+ "ABarapppp->ABpraapaa": 0.8292930126190186,
+ "ABpraapaa->ABarapppp": 0.8292930126190186,
+ "ABarpaaaa->MSaaaa": 0.9123597741127014,
+ "MSaaaa->ABarpaaaa": 0.9123597741127014,
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+ "Eara->ABarpaapp": 0.9123597741127014,
+ "ABarpapaa->ABpraaaaa": 0.8292930126190186,
+ "ABpraaaaa->ABarpapaa": 0.8292930126190186,
+ "ABarppap->Z3": 0.761333703994751,
+ "Z3->ABarppap": 0.761333703994751,
+ "ABarpppaa->MSppap": 0.9123597741127014,
+ "MSppap->ABarpppaa": 0.9123597741127014,
+ "ABarpppap->MSpppa": 0.9123597741127014,
+ "MSpppa->ABarpppap": 0.9123597741127014,
+ "ABplaappa->ABplpaaap": 0.9123597741127014,
+ "ABplpaaap->ABplaappa": 0.9123597741127014,
+ "ABplaappa->ABplpaapp": 0.9123597741127014,
+ "ABplpaapp->ABplaappa": 0.9123597741127014,
+ "ABplapaaa->MSapap": 0.9123597741127014,
+ "MSapap->ABplapaaa": 0.9123597741127014,
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+ "ABplppppa->ABplapapp": 0.9123597741127014,
+ "ABplappaa->ABplppapp": 0.9123597741127014,
+ "ABplppapp->ABplappaa": 0.9123597741127014,
+ "ABplappaa->ABplpppaa": 0.9123597741127014,
+ "ABplpppaa->ABplappaa": 0.9123597741127014,
+ "ABplappap->ABplpppap": 0.8292930126190186,
+ "ABplpppap->ABplappap": 0.8292930126190186,
+ "ABplpappa->ABplppapa": 0.9123597741127014,
+ "ABplppapa->ABplpappa": 0.9123597741127014,
+ "ABplppapp->ABplpppaa": 0.9123597741127014,
+ "ABplpppaa->ABplppapp": 0.9123597741127014,
+ "ABpraapap->ABpraappa": 0.9123597741127014,
+ "ABpraappa->ABpraapap": 0.9123597741127014,
+ "ABpraapap->ABprapaaa": 0.9123597741127014,
+ "ABprapaaa->ABpraapap": 0.9123597741127014,
+ "ABpraappa->ABprapaaa": 0.9123597741127014,
+ "ABprapaaa->ABpraappa": 0.9123597741127014,
+ "ABpraappp->ABprapaap": 0.9123597741127014,
+ "ABprapaap->ABpraappp": 0.9123597741127014,
+ "ABpraappp->ABprppaaa": 0.9123597741127014,
+ "ABprppaaa->ABpraappp": 0.9123597741127014,
+ "ABprapapa->ABprppapa": 0.9123597741127014,
+ "ABprppapa->ABprapapa": 0.9123597741127014,
+ "ABprapapp->ABprppapp": 0.8292930126190186,
+ "ABprppapp->ABprapapp": 0.8292930126190186,
+ "ABprappaa->ABprppaap": 0.8292930126190186,
+ "ABprppaap->ABprappaa": 0.8292930126190186,
+ "ABprappap->ABprpppaa": 0.8292930126190186,
+ "ABprpppaa->ABprappap": 0.8292930126190186,
+ "ABprappap->ABprppppa": 0.9123597741127014,
+ "ABprppppa->ABprappap": 0.9123597741127014,
+ "ABprapppp->Cppa": 0.8292930126190186,
+ "Cppa->ABprapppp": 0.8292930126190186,
+ "ABprpappp->ABprppapa": 0.9123597741127014,
+ "ABprppapa->ABprpappp": 0.9123597741127014,
+ "MSaapa->Eala": 0.8292930126190186,
+ "Eala->MSaapa": 0.8292930126190186,
+ "MSaapp->Ealp": 0.8292930126190186,
+ "Ealp->MSaapp": 0.8292930126190186,
+ "Caaaa->Daa": 0.8292930126190186,
+ "Daa->Caaaa": 0.8292930126190186,
+ "Cpaaa->Z2": 0.761333703994751,
+ "Z2->Cpaaa": 0.761333703994751,
+ "Cpaap->Dpp": 0.8292930126190186,
+ "Dpp->Cpaap": 0.8292930126190186,
+ "ABalaaaa->ABalaaaal": 0.8292930126190186,
+ "ABalaaaa->ABalaaaar": 0.8292930126190186,
+ "ABalaaap->ABalaaapa": 0.8292930126190186,
+ "ABalaaap->ABalaaapp": 0.8292930126190186,
+ "ABalaapa->ABalaapaa": 0.761333703994751,
+ "ABalaapa->ABalaapap": 0.761333703994751,
+ "ABalaapp->ABalaappa": 0.761333703994751,
+ "ABalaapp->ABalaappp": 0.761333703994751,
+ "ABalapaa->ABalapaaa": 0.761333703994751,
+ "ABalapaa->ABalapaap": 0.761333703994751,
+ "ABalapap->ABalapapa": 0.6432212591171265,
+ "ABalapap->ABalapapp": 0.761333703994751,
+ "ABalappa->ABalappaa": 0.6432212591171265,
+ "ABalappa->ABalappap": 0.8292930126190186,
+ "ABalappp->ABalapppa": 0.761333703994751,
+ "ABalappp->ABalapppp": 0.6432212591171265,
+ "ABalpaaa->ABalpaaaa": 0.761333703994751,
+ "ABalpaaa->ABalpaaap": 0.761333703994751,
+ "ABalpaap->ABalpaapa": 0.6432212591171265,
+ "ABalpaap->ABalpaapp": 0.761333703994751,
+ "ABalpapa->ABalpapaa": 0.8292930126190186,
+ "ABalpapa->ABalpapap": 0.8292930126190186,
+ "ABalpapp->ABalpappa": 0.761333703994751,
+ "ABalpapp->ABalpappp": 0.8292930126190186,
+ "ABalppa->ABalppaa": 0.761333703994751,
+ "ABalppap->ABalppapa": 0.8292930126190186,
+ "ABalppap->ABalppapp": 0.761333703994751,
+ "ABalpppa->ABalpppaa": 0.761333703994751,
+ "ABalpppa->ABalpppap": 0.761333703994751,
+ "ABalpppp->ABalppppa": 0.761333703994751,
+ "ABalpppp->ABalppppp": 0.761333703994751,
+ "ABaraaaa->ABaraaaaa": 0.761333703994751,
+ "ABaraaaa->ABaraaaap": 0.761333703994751,
+ "ABaraaap->ABaraaapa": 0.761333703994751,
+ "ABaraaap->ABaraaapp": 0.761333703994751,
+ "ABaraapa->ABaraapaa": 0.8292930126190186,
+ "ABaraapa->ABaraapap": 0.761333703994751,
+ "ABaraapp->ABaraappa": 0.761333703994751,
+ "ABaraapp->ABaraappp": 0.8292930126190186,
+ "ABarapaa->ABarapaaa": 0.8292930126190186,
+ "ABarapaa->ABarapaap": 0.761333703994751,
+ "ABarapap->ABarapapa": 0.761333703994751,
+ "ABarapap->ABarapapp": 0.8292930126190186,
+ "ABarappa->ABarappaa": 0.761333703994751,
+ "ABarappa->ABarappap": 0.761333703994751,
+ "ABarappp->ABarapppa": 0.8292930126190186,
+ "ABarappp->ABarapppp": 0.8292930126190186,
+ "ABarpaaa->ABarpaaaa": 0.8292930126190186,
+ "ABarpaaa->ABarpaaap": 0.8292930126190186,
+ "ABarpaap->ABarpaapa": 0.761333703994751,
+ "ABarpaap->ABarpaapp": 0.8292930126190186,
+ "ABarpapa->ABarpapaa": 0.8292930126190186,
+ "ABarpapa->ABarpapap": 0.761333703994751,
+ "ABarpapp->ABarpappa": 0.761333703994751,
+ "ABarpapp->ABarpappp": 0.761333703994751,
+ "ABarppaa->ABarppaaa": 0.761333703994751,
+ "ABarppaa->ABarppaap": 0.761333703994751,
+ "ABarppa->ABarppap": 0.761333703994751,
+ "ABarpppa->ABarpppaa": 0.8292930126190186,
+ "ABarpppa->ABarpppap": 0.8292930126190186,
+ "ABarppp->ABarpppp": 0.761333703994751,
+ "ABplaaaa->ABplaaaaa": 0.8292930126190186,
+ "ABplaaaa->ABplaaaap": 0.8292930126190186,
+ "ABplaaap->ABplaaapa": 0.6432212591171265,
+ "ABplaaap->ABplaaapp": 0.761333703994751,
+ "ABplaapa->ABplaapaa": 0.6432212591171265,
+ "ABplaapa->ABplaapap": 0.6432212591171265,
+ "ABplaapp->ABplaappa": 0.8292930126190186,
+ "ABplaapp->ABplaappp": 0.6432212591171265,
+ "ABplapaa->ABplapaaa": 0.8292930126190186,
+ "ABplapaa->ABplapaap": 0.6432212591171265,
+ "ABplapap->ABplapapa": 0.6432212591171265,
+ "ABplapap->ABplapapp": 0.8292930126190186,
+ "ABplappa->ABplappaa": 0.8292930126190186,
+ "ABplappa->ABplappap": 0.8292930126190186,
+ "ABplappp->ABplapppa": 0.6432212591171265,
+ "ABplappp->ABplapppp": 0.6432212591171265,
+ "ABplpaaa->ABplpaaaa": 0.6432212591171265,
+ "ABplpaaa->ABplpaaap": 0.8292930126190186,
+ "ABplpaap->ABplpaapa": 0.6432212591171265,
+ "ABplpaap->ABplpaapp": 0.8292930126190186,
+ "ABplpapa->ABplpapaa": 0.6432212591171265,
+ "ABplpapa->ABplpapap": 0.6432212591171265,
+ "ABplpapp->ABplpappa": 0.761333703994751,
+ "ABplpapp->ABplpappp": 0.6432212591171265,
+ "ABplppaa->ABplppaaa": 0.6432212591171265,
+ "ABplppaa->ABplppaap": 0.6432212591171265,
+ "ABplppap->ABplppapa": 0.761333703994751,
+ "ABplppap->ABplppapp": 0.761333703994751,
+ "ABplpppa->ABplpppaa": 0.761333703994751,
+ "ABplpppa->ABplpppap": 0.761333703994751,
+ "ABplpppp->ABplppppa": 0.761333703994751,
+ "ABplpppp->ABplppppp": 0.6432212591171265,
+ "ABpraaaa->ABpraaaaa": 0.761333703994751,
+ "ABpraaaa->ABpraaaap": 0.6432212591171265,
+ "ABpraaap->ABpraaapa": 0.6432212591171265,
+ "ABpraaap->ABpraaapp": 0.761333703994751,
+ "ABpraapa->ABpraapaa": 0.8292930126190186,
+ "ABpraapa->ABpraapap": 0.8292930126190186,
+ "ABpraapp->ABpraappa": 0.761333703994751,
+ "ABpraapp->ABpraappp": 0.761333703994751,
+ "ABprapaa->ABprapaaa": 0.8292930126190186,
+ "ABprapaa->ABprapaap": 0.8292930126190186,
+ "ABprapap->ABprapapa": 0.8292930126190186,
+ "ABprapap->ABprapapp": 0.8292930126190186,
+ "ABprappa->ABprappaa": 0.8292930126190186,
+ "ABprappa->ABprappap": 0.8292930126190186,
+ "ABprappp->ABprapppa": 0.6432212591171265,
+ "ABprappp->ABprapppp": 0.8292930126190186,
+ "ABprpaaa->ABprpaaaa": 0.6432212591171265,
+ "ABprpaaa->ABprpaaap": 0.6432212591171265,
+ "ABprpaap->ABprpaapa": 0.6432212591171265,
+ "ABprpaap->ABprpaapp": 0.6432212591171265,
+ "ABprpapa->ABprpapaa": 0.6432212591171265,
+ "ABprpapa->ABprpapap": 0.6432212591171265,
+ "ABprpapp->ABprpappa": 0.6432212591171265,
+ "ABprpapp->ABprpappp": 0.761333703994751,
+ "ABprppaa->ABprppaaa": 0.761333703994751,
+ "ABprppaa->ABprppaap": 0.761333703994751,
+ "ABprppap->ABprppapa": 0.761333703994751,
+ "ABprppap->ABprppapp": 0.761333703994751,
+ "ABprpppa->ABprpppaa": 0.8292930126190186,
+ "ABprpppa->ABprpppap": 0.6432212591171265,
+ "ABprpppp->ABprppppa": 0.761333703994751,
+ "ABprpppp->ABprppppp": 0.6432212591171265,
+ "MSaaa->MSaaaa": 0.761333703994751,
+ "MSaaa->MSaaap": 0.761333703994751,
+ "MSaap->MSaapa": 0.761333703994751,
+ "MSaap->MSaapp": 0.761333703994751,
+ "MSapa->MSapaa": 0.761333703994751,
+ "MSapa->MSapap": 0.761333703994751,
+ "MSapp->MSappa": 0.6432212591171265,
+ "MSapp->MSappp": 0.6432212591171265,
+ "MSpaa->MSpaaa": 0.6432212591171265,
+ "MSpaa->MSpaap": 0.761333703994751,
+ "MSpap->MSpapa": 0.6432212591171265,
+ "MSpap->MSpapp": 0.6432212591171265,
+ "MSppa->MSppaa": 0.761333703994751,
+ "MSppa->MSppap": 0.761333703994751,
+ "MSppp->MSpppa": 0.8292930126190186,
+ "MSppp->MSpppp": 0.761333703994751,
+ "Eal->Eala": 0.8292930126190186,
+ "Eal->Ealp": 0.8292930126190186,
+ "Ear->Eara": 0.761333703994751,
+ "Ear->Earp": 0.6432212591171265,
+ "Epl->Epla": 0.6432212591171265,
+ "Epl->Eplp": 0.6432212591171265,
+ "Epr->Epra": 0.6432212591171265,
+ "Epr->Eprp": 0.6432212591171265,
+ "Caaa->Caaaa": 0.761333703994751,
+ "Caaa->Caaap": 0.6432212591171265,
+ "Caa->Caap": 0.6432212591171265,
+ "Cap->Capa": 0.6432212591171265,
+ "Cap->Capp": 0.6432212591171265,
+ "Cpaa->Cpaaa": 0.8292930126190186,
+ "Cpaa->Cpaap": 0.8292930126190186,
+ "Cpap->Cpapa": 0.6432212591171265,
+ "Cpap->Cpapp": 0.6432212591171265,
+ "Cpp->Cppa": 0.6432212591171265,
+ "Cppp->Cpppa": 0.6432212591171265,
+ "Cppp->Cpppp": 0.6432212591171265,
+ "Da->Daa": 0.761333703994751,
+ "Da->Dap": 0.6432212591171265,
+ "Dp->Dpa": 0.6432212591171265,
+ "Dp->Dpp": 0.761333703994751
+ }
+ },
+ {
+ "timestep": 180,
+ "attentions": {
+ "ABalaaapa->ABalpaapaa": 0.8292930126190186,
+ "ABalpaapaa->ABalaaapa": 0.8292930126190186,
+ "ABalaaapp->ABaraaaaa": 0.8292930126190186,
+ "ABaraaaaa->ABalaaapp": 0.8292930126190186,
+ "ABalaapap->ABalaappa": 0.8292930126190186,
+ "ABalaappa->ABalaapap": 0.8292930126190186,
+ "ABalaapap->ABalaappp": 0.8292930126190186,
+ "ABalaappp->ABalaapap": 0.8292930126190186,
+ "ABalapaap->ABplaaaaa": 0.8292930126190186,
+ "ABplaaaaa->ABalapaap": 0.8292930126190186,
+ "ABalapapa->ABaraapaa": 0.8292930126190186,
+ "ABaraapaa->ABalapapa": 0.8292930126190186,
+ "ABalapapp->ABplaaaap": 0.8292930126190186,
+ "ABplaaaap->ABalapapp": 0.8292930126190186,
+ "ABalappaa->MSaaaaa": 0.8292930126190186,
+ "MSaaaaa->ABalappaa": 0.8292930126190186,
+ "ABalappap->ABaraaapa": 0.8292930126190186,
+ "ABaraaapa->ABalappap": 0.8292930126190186,
+ "ABalapppp->ABarappaa": 0.9123597741127014,
+ "ABarappaa->ABalapppp": 0.9123597741127014,
+ "ABalapppp->ABarpapap": 0.9123597741127014,
+ "ABarpapap->ABalapppp": 0.9123597741127014,
+ "ABalapppp->MSppaap": 1.0,
+ "MSppaap->ABalapppp": 1.0,
+ "ABalpaaaa->MSaaaaa": 0.8292930126190186,
+ "MSaaaaa->ABalpaaaa": 0.8292930126190186,
+ "ABalpaaap->MSaaaap": 0.8292930126190186,
+ "MSaaaap->ABalpaaap": 0.8292930126190186,
+ "ABalpaapp->ABalppaaa": 0.9123597741127014,
+ "ABalppaaa->ABalpaapp": 0.9123597741127014,
+ "ABalpaapp->ABalpppaa": 0.9123597741127014,
+ "ABalpppaa->ABalpaapp": 0.9123597741127014,
+ "ABalpapaa->MSapaaa": 0.8292930126190186,
+ "MSapaaa->ABalpapaa": 0.8292930126190186,
+ "ABalpapap->MSapaap": 0.8292930126190186,
+ "MSapaap->ABalpapap": 0.8292930126190186,
+ "ABalpapppa->ABarapapa": 0.8292930126190186,
+ "ABarapapa->ABalpapppa": 0.8292930126190186,
+ "ABalppaaa->ABalpppaa": 0.9123597741127014,
+ "ABalpppaa->ABalppaaa": 0.9123597741127014,
+ "ABalppaap->ABalpppap": 0.9123597741127014,
+ "ABalpppap->ABalppaap": 0.9123597741127014,
+ "ABalppapa->ABplaapaa": 0.9123597741127014,
+ "ABplaapaa->ABalppapa": 0.9123597741127014,
+ "ABalppapp->ABalppppp": 0.9123597741127014,
+ "ABalppppp->ABalppapp": 0.9123597741127014,
+ "ABalppapp->ABplpaaaa": 0.9123597741127014,
+ "ABplpaaaa->ABalppapp": 0.9123597741127014,
+ "ABalppppa->ABplaapaa": 0.9123597741127014,
+ "ABplaapaa->ABalppppa": 0.9123597741127014,
+ "ABalppppp->ABplpaaaa": 0.9123597741127014,
+ "ABplpaaaa->ABalppppp": 0.9123597741127014,
+ "ABalppppp->ABplpaapa": 0.9123597741127014,
+ "ABplpaapa->ABalppppp": 0.9123597741127014,
+ "ABaraaapp->MSppaaa": 0.9123597741127014,
+ "MSppaaa->ABaraaapp": 0.9123597741127014,
+ "ABaraapaa->ABarpaaaa": 0.9123597741127014,
+ "ABarpaaaa->ABaraapaa": 0.9123597741127014,
+ "ABaraappp->MSpaapa": 0.8292930126190186,
+ "MSpaapa->ABaraappp": 0.8292930126190186,
+ "ABarapaap->MSpaaap": 0.8292930126190186,
+ "MSpaaap->ABarapaap": 0.8292930126190186,
+ "ABarapapa->ABarpaapa": 0.9123597741127014,
+ "ABarpaapa->ABarapapa": 0.9123597741127014,
+ "ABarappaa->MSppaap": 0.9123597741127014,
+ "MSppaap->ABarappaa": 0.9123597741127014,
+ "ABarappap->MSppapa": 0.9123597741127014,
+ "MSppapa->ABarappap": 0.9123597741127014,
+ "ABarapppp->ABpraaapp": 0.9123597741127014,
+ "ABpraaapp->ABarapppp": 0.9123597741127014,
+ "ABarapppp->ABprpaaaa": 0.9123597741127014,
+ "ABprpaaaa->ABarapppp": 0.9123597741127014,
+ "ABarpaapp->MSpaapp": 0.9123597741127014,
+ "MSpaapp->ABarpaapp": 0.9123597741127014,
+ "ABarpaapp->Eara": 0.9123597741127014,
+ "Eara->ABarpaapp": 0.9123597741127014,
+ "ABarpapap->MSppaap": 0.9123597741127014,
+ "MSppaap->ABarpapap": 0.9123597741127014,
+ "ABarpappa->MSppapa": 0.9123597741127014,
+ "MSppapa->ABarpappa": 0.9123597741127014,
+ "ABarpappp->ABprpapaa": 0.9123597741127014,
+ "ABprpapaa->ABarpappp": 0.9123597741127014,
+ "ABarpappp->MSppapp": 0.9123597741127014,
+ "MSppapp->ABarpappp": 0.9123597741127014,
+ "ABarpppap->MSppppa": 0.9123597741127014,
+ "MSppppa->ABarpppap": 0.9123597741127014,
+ "ABarppppa->ABprppppa": 0.9123597741127014,
+ "ABprppppa->ABarppppa": 0.9123597741127014,
+ "ABarppppp->ABprppppp": 0.8292930126190186,
+ "ABprppppp->ABarppppp": 0.8292930126190186,
+ "ABplaaapp->ABplpappa": 0.9123597741127014,
+ "ABplpappa->ABplaaapp": 0.9123597741127014,
+ "ABplaaapp->MSappaa": 0.9123597741127014,
+ "MSappaa->ABplaaapp": 0.9123597741127014,
+ "ABplaapap->ABplpapaa": 0.8292930126190186,
+ "ABplpapaa->ABplaapap": 0.8292930126190186,
+ "ABplaapap->MSapapa": 0.8292930126190186,
+ "MSapapa->ABplaapap": 0.8292930126190186,
+ "ABplaappp->ABplppapa": 0.9123597741127014,
+ "ABplppapa->ABplaappp": 0.9123597741127014,
+ "ABplapaaa->ABplpapap": 0.8292930126190186,
+ "ABplpapap->ABplapaaa": 0.8292930126190186,
+ "ABplapaap->ABplppapp": 0.9123597741127014,
+ "ABplppapp->ABplapaap": 0.9123597741127014,
+ "ABplapaap->ABplppppa": 0.8292930126190186,
+ "ABplppppa->ABplapaap": 0.8292930126190186,
+ "ABplapapa->ABplppppp": 0.8292930126190186,
+ "ABplppppp->ABplapapa": 0.8292930126190186,
+ "ABplappap->ABplapppa": 0.9123597741127014,
+ "ABplapppa->ABplappap": 0.9123597741127014,
+ "ABplpappa->MSappaa": 0.9123597741127014,
+ "MSappaa->ABplpappa": 0.9123597741127014,
+ "ABplpappp->MSappap": 0.9123597741127014,
+ "MSappap->ABplpappp": 0.9123597741127014,
+ "ABplpappp->MSapppa": 0.8292930126190186,
+ "MSapppa->ABplpappp": 0.8292930126190186,
+ "ABplppaap->ABplppapa": 0.8292930126190186,
+ "ABplppapa->ABplppaap": 0.8292930126190186,
+ "ABplppapp->ABplpppaa": 0.8292930126190186,
+ "ABplpppaa->ABplppapp": 0.8292930126190186,
+ "ABpraaapa->MSppaaa": 0.8292930126190186,
+ "MSppaaa->ABpraaapa": 0.8292930126190186,
+ "ABpraaapp->ABpraapaa": 0.9123597741127014,
+ "ABpraapaa->ABpraaapp": 0.9123597741127014,
+ "ABpraaapp->ABprpaaaa": 1.0,
+ "ABprpaaaa->ABpraaapp": 1.0,
+ "ABpraapaa->ABprpaaaa": 0.9123597741127014,
+ "ABprpaaaa->ABpraapaa": 0.9123597741127014,
+ "ABpraapap->ABpraappa": 0.8292930126190186,
+ "ABpraappa->ABpraapap": 0.8292930126190186,
+ "ABpraapap->ABprpaaap": 0.9123597741127014,
+ "ABprpaaap->ABpraapap": 0.9123597741127014,
+ "ABpraapap->ABprpaapa": 0.9123597741127014,
+ "ABprpaapa->ABpraapap": 0.9123597741127014,
+ "ABpraappp->ABprapaaa": 0.8292930126190186,
+ "ABprapaaa->ABpraappp": 0.8292930126190186,
+ "ABprapaaa->ABprppaap": 0.8292930126190186,
+ "ABprppaap->ABprapaaa": 0.8292930126190186,
+ "ABprapaap->ABprppapa": 0.8292930126190186,
+ "ABprppapa->ABprapaap": 0.8292930126190186,
+ "ABprapapa->ABprappap": 0.8292930126190186,
+ "ABprappap->ABprapapa": 0.8292930126190186,
+ "ABprapapp->ABprapppp": 0.8292930126190186,
+ "ABprapppp->ABprapapp": 0.8292930126190186,
+ "ABprapppa->ABprpppap": 0.8292930126190186,
+ "ABprpppap->ABprapppa": 0.8292930126190186,
+ "ABprpaaap->ABprpaapa": 0.9123597741127014,
+ "ABprpaapa->ABprpaaap": 0.9123597741127014,
+ "ABprpapaa->MSppapp": 0.9123597741127014,
+ "MSppapp->ABprpapaa": 0.9123597741127014,
+ "ABprpapap->MSppppa": 0.8292930126190186,
+ "MSppppa->ABprpapap": 0.8292930126190186,
+ "ABprpappa->MSpppap": 0.8292930126190186,
+ "MSpppap->ABprpappa": 0.8292930126190186,
+ "ABprpappp->Epra": 0.8292930126190186,
+ "Epra->ABprpappp": 0.8292930126190186,
+ "ABprppapp->ABprpppaa": 0.8292930126190186,
+ "ABprpppaa->ABprppapp": 0.8292930126190186,
+ "ABprppppa->MSppppp": 0.9123597741127014,
+ "MSppppp->ABprppppa": 0.9123597741127014,
+ "MSaapaa->Eala": 0.8292930126190186,
+ "Eala->MSaapaa": 0.8292930126190186,
+ "MSaapap->MSaappa": 0.8292930126190186,
+ "MSaappa->MSaapap": 0.8292930126190186,
+ "MSappap->Ealp": 0.8292930126190186,
+ "Ealp->MSappap": 0.8292930126190186,
+ "MSapppp->Daa": 0.8292930126190186,
+ "Daa->MSapppp": 0.8292930126190186,
+ "MSpaapp->MSpapaa": 0.8292930126190186,
+ "MSpapaa->MSpaapp": 0.8292930126190186,
+ "MSpaapp->Eara": 0.9123597741127014,
+ "Eara->MSpaapp": 0.9123597741127014,
+ "MSpappa->Earp": 0.8292930126190186,
+ "Earp->MSpappa": 0.8292930126190186,
+ "Epra->Dppa": 0.8292930126190186,
+ "Dppa->Epra": 0.8292930126190186,
+ "Eprp->Dppp": 0.8292930126190186,
+ "Dppp->Eprp": 0.8292930126190186,
+ "Caapa->Caapp": 0.761333703994751,
+ "Caapp->Caapa": 0.761333703994751,
+ "Capaa->Dapa": 0.8292930126190186,
+ "Dapa->Capaa": 0.8292930126190186,
+ "Cpaap->Cpppp": 0.8292930126190186,
+ "Cpppp->Cpaap": 0.8292930126190186,
+ "Cpapa->Cpapp": 0.8292930126190186,
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+ "Ear->Earp": 0.6432212591171265,
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+ "Dap->Dapp": 0.5572793483734131,
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+ "Dpp->Dppa": 0.6432212591171265,
+ "Dpp->Dppp": 0.6432212591171265
+ }
+ }
+ ]
+ },
+ "rnai_embryo": {
+ "filename": "CD030906_dyf7red.npz",
+ "timesteps": [
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+ 90,
+ 120,
+ 150,
+ 180
+ ],
+ "data": [
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+ "ABar->ABara": 1.0,
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+ "MS->MSp": 0.9123597741127014,
+ "E->Ea": 1.0,
+ "E->Ep": 0.9123597741127014
+ }
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+ "ABala->ABalaa": 0.9123597741127014,
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+ "ABalp->ABalpp": 0.9123597741127014,
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+ "ABprp->ABprpp": 0.9123597741127014,
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+ "E->Ea": 0.9123597741127014,
+ "E->Ep": 0.9123597741127014,
+ "Ca->Caa": 0.9123597741127014,
+ "Ca->Cap": 0.9123597741127014,
+ "Cp->Cpa": 0.9123597741127014,
+ "Cp->Cpp": 0.9123597741127014
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+ {
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+ "ABplaapa->ABalaap": 1.0,
+ "ABplpapa->MSapp": 1.0,
+ "MSapp->ABplpapa": 1.0,
+ "ABplpapp->MSapp": 1.0,
+ "MSapp->ABplpapp": 1.0,
+ "ABprppp->Cppa": 1.0,
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+ "ABalaa->ABalaaa": 0.9123597741127014,
+ "ABalaa->ABalaap": 1.0,
+ "ABalap->ABalapa": 0.8292930126190186,
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+ "ABalpap->ABalpapa": 0.9123597741127014,
+ "ABalpap->ABalpapp": 0.9123597741127014,
+ "ABalpp->ABalppa": 0.9123597741127014,
+ "ABalppp->ABalpppa": 0.9123597741127014,
+ "ABalppp->ABalpppp": 0.9123597741127014,
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+ "ABaraap->ABaraapp": 0.9123597741127014,
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+ "ABarap->ABarapp": 0.9123597741127014,
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+ "ABarpap->ABarpapp": 0.9123597741127014,
+ "ABarppa->ABarppaa": 0.9123597741127014,
+ "ABarppa->ABarppap": 0.9123597741127014,
+ "ABarpp->ABarppp": 0.9123597741127014,
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+ "ABplaap->ABplaapa": 0.9123597741127014,
+ "ABplaap->ABplaapp": 0.8292930126190186,
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+ "ABplapa->ABplapap": 0.8292930126190186,
+ "ABplapp->ABplappa": 0.8292930126190186,
+ "ABplapp->ABplappp": 0.8292930126190186,
+ "ABplpa->ABplpaa": 0.8292930126190186,
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+ "ABplpap->ABplpapp": 0.9123597741127014,
+ "ABplpp->ABplppa": 0.8292930126190186,
+ "ABplpp->ABplppp": 0.9123597741127014,
+ "ABpraa->ABpraaa": 0.8292930126190186,
+ "ABpraap->ABpraapa": 0.8292930126190186,
+ "ABpraap->ABpraapp": 0.8292930126190186,
+ "ABprapa->ABprapaa": 0.9123597741127014,
+ "ABprapa->ABprapap": 0.9123597741127014,
+ "ABprap->ABprapp": 0.9123597741127014,
+ "ABprpa->ABprpaa": 0.9123597741127014,
+ "ABprpa->ABprpap": 0.9123597741127014,
+ "ABprpp->ABprppa": 0.9123597741127014,
+ "ABprpp->ABprppp": 0.9123597741127014,
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+ "MSaa->MSaap": 0.8292930126190186,
+ "MSap->MSapa": 0.8292930126190186,
+ "MSap->MSapp": 0.9123597741127014,
+ "MSpa->MSpaa": 0.8292930126190186,
+ "MSpa->MSpap": 0.8292930126190186,
+ "MSpp->MSppa": 0.8292930126190186,
+ "MSpp->MSppp": 0.8292930126190186,
+ "Ea->Eal": 0.8292930126190186,
+ "Ea->Ear": 0.8292930126190186,
+ "Ep->Epl": 0.8292930126190186,
+ "Ep->Epr": 0.8292930126190186,
+ "Caa->Caaa": 0.9123597741127014,
+ "Caa->Caap": 0.9123597741127014,
+ "Cap->Capa": 0.9123597741127014,
+ "Cap->Capp": 0.8292930126190186,
+ "Cpa->Cpaa": 0.8292930126190186,
+ "Cpa->Cpap": 0.8292930126190186,
+ "Cpp->Cppa": 0.9123597741127014,
+ "Cpp->Cppp": 0.8292930126190186,
+ "D->Da": 0.8292930126190186,
+ "D->Dp": 0.8292930126190186
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+ },
+ {
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+ "ABalaapa->ABaraaap": 0.9123597741127014,
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+ "ABarpaaa->ABalaapa": 0.9123597741127014,
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+ "ABalapaa->ABaraapa": 1.0,
+ "ABaraapa->ABalapaa": 1.0,
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+ "ABalappp->ABaraapp": 0.9123597741127014,
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+ "ABalpppa->ABplaaaa": 0.9123597741127014,
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+ "ABalpppp->MSaapa": 0.9123597741127014,
+ "MSaapa->ABalpppp": 0.9123597741127014,
+ "ABaraapa->MSaaaa": 1.0,
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+ "ABarappa->ABpraaap": 0.9123597741127014,
+ "ABpraaap->ABarappa": 0.9123597741127014,
+ "ABarappp->ABpraapa": 0.9123597741127014,
+ "ABpraapa->ABarappp": 0.9123597741127014,
+ "ABarppaa->Eala": 0.9123597741127014,
+ "Eala->ABarppaa": 0.9123597741127014,
+ "ABarppap->Ealp": 0.9123597741127014,
+ "Ealp->ABarppap": 0.9123597741127014,
+ "ABarpppa->MSppap": 0.9123597741127014,
+ "MSppap->ABarpppa": 0.9123597741127014,
+ "ABplaappp->ABplpapp": 0.9123597741127014,
+ "ABplpapp->ABplaappp": 0.9123597741127014,
+ "ABplappp->ABplpppp": 0.9123597741127014,
+ "ABplpppp->ABplappp": 0.9123597741127014,
+ "ABplpaap->ABplpapa": 0.9123597741127014,
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+ "ABpraapp->ABprpaap": 0.9123597741127014,
+ "ABprpaap->ABpraapp": 0.9123597741127014,
+ "ABprappa->ABprppap": 0.9123597741127014,
+ "ABprppap->ABprappa": 0.9123597741127014,
+ "ABprappp->ABprpppp": 0.9123597741127014,
+ "ABprpppp->ABprappp": 0.9123597741127014,
+ "MSppaa->Eara": 0.9123597741127014,
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+ "Cpaa->Dpa": 0.9123597741127014,
+ "Dpa->Cpaa": 0.9123597741127014,
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+ "Dp->Dpa": 0.8292930126190186,
+ "Dp->Dpp": 0.8292930126190186
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+ },
+ {
+ "timestep": 150,
+ "attentions": {
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+ {
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+ "ABarappap->ABarappapp": 0.40993422269821167,
+ "ABarapppa->ABarapppaa": 0.6432212591171265,
+ "ABarapppa->ABarapppap": 0.6432212591171265,
+ "ABarapppp->ABarappppa": 0.6432212591171265,
+ "ABarapppp->ABarappppp": 0.6432212591171265,
+ "ABarpaaa->ABarpaaaa": 0.6432212591171265,
+ "ABarpaaa->ABarpaaap": 0.40993422269821167,
+ "ABarpaapa->ABarpaapaa": 0.5572793483734131,
+ "ABarpaapa->ABarpaapap": 0.4652247428894043,
+ "ABarpaapp->ABarpaappa": 0.6432212591171265,
+ "ABarpaapp->ABarpaappp": 0.4652247428894043,
+ "ABarpapaa->ABarpapaaa": 0.6432212591171265,
+ "ABarpapaa->ABarpapaap": 0.6432212591171265,
+ "ABarpapap->ABarpapapa": 0.5572793483734131,
+ "ABarpapap->ABarpapapp": 0.5572793483734131,
+ "ABarpapp->ABarpappa": 0.40993422269821167,
+ "ABarpappp->ABarpapppa": 0.40993422269821167,
+ "ABarpappp->ABarpapppp": 0.5572793483734131,
+ "ABarppaa->ABarppaaa": 0.4652247428894043,
+ "ABarppaap->ABarppaapa": 0.5572793483734131,
+ "ABarppaap->ABarppaapp": 0.5572793483734131,
+ "ABarppap->ABarppapa": 0.40993422269821167,
+ "ABarppap->ABarppapp": 0.5572793483734131,
+ "ABarpppaa->ABarpppaaa": 0.5572793483734131,
+ "ABarpppaa->ABarpppaap": 0.5572793483734131,
+ "ABarpppap->ABarpppapa": 0.40993422269821167,
+ "ABarpppap->ABarpppapp": 0.5572793483734131,
+ "ABarpppp->ABarppppa": 0.5572793483734131,
+ "ABarpppp->ABarppppp": 0.5572793483734131,
+ "ABplaaaaa->ABplaaaaaa": 0.5572793483734131,
+ "ABplaaaaa->ABplaaaaap": 0.5572793483734131,
+ "ABplaaaap->ABplaaaapa": 0.5572793483734131,
+ "ABplaaaap->ABplaaaapp": 0.5572793483734131,
+ "ABplaaap->ABplaaapa": 0.40993422269821167,
+ "ABplaaapp->ABplaaappa": 0.40993422269821167,
+ "ABplaaapp->ABplaaappp": 0.40993422269821167,
+ "ABplaapaa->ABplaapaaa": 0.4652247428894043,
+ "ABplaapaa->ABplaapaap": 0.4652247428894043,
+ "ABplaapap->ABplaapapa": 0.4652247428894043,
+ "ABplaapap->ABplaapapp": 0.4652247428894043,
+ "ABplaappa->ABplaappaa": 0.5572793483734131,
+ "ABplaappa->ABplaappap": 0.5572793483734131,
+ "ABplaappp->ABplaapppa": 0.5572793483734131,
+ "ABplaappp->ABplaapppp": 0.5572793483734131,
+ "ABplapaaa->ABplapaaaa": 0.4652247428894043,
+ "ABplapaaa->ABplapaaap": 0.4652247428894043,
+ "ABplapaap->ABplapaapa": 0.4652247428894043,
+ "ABplapaap->ABplapaapp": 0.4652247428894043,
+ "ABplapapa->ABplapapaa": 0.40993422269821167,
+ "ABplapapa->ABplapapap": 0.5572793483734131,
+ "ABplapapp->ABplapappa": 0.4652247428894043,
+ "ABplapapp->ABplapappp": 0.4652247428894043,
+ "ABplappaa->ABplappaaa": 0.4652247428894043,
+ "ABplappaa->ABplappaap": 0.4652247428894043,
+ "ABplappap->ABplappapa": 0.4652247428894043,
+ "ABplappap->ABplappapp": 0.40993422269821167,
+ "ABplappp->ABplapppa": 0.4652247428894043,
+ "ABplappp->ABplapppp": 0.4652247428894043,
+ "ABplpaaaa->ABplpaaaaa": 0.4652247428894043,
+ "ABplpaaaa->ABplpaaaap": 0.4652247428894043,
+ "ABplpaaap->ABplpaaapa": 0.4652247428894043,
+ "ABplpaaap->ABplpaaapp": 0.4652247428894043,
+ "ABplpaapa->ABplpaapaa": 0.4652247428894043,
+ "ABplpaapa->ABplpaapap": 0.4652247428894043,
+ "ABplpaapp->ABplpaappa": 0.4652247428894043,
+ "ABplpaapp->ABplpaappp": 0.4652247428894043,
+ "ABplpapaa->ABplpapaaa": 0.4652247428894043,
+ "ABplpapaa->ABplpapaap": 0.4652247428894043,
+ "ABplpapap->ABplpapapa": 0.4652247428894043,
+ "ABplpapap->ABplpapapp": 0.4652247428894043,
+ "ABplpappa->ABplpappaa": 0.4652247428894043,
+ "ABplpappa->ABplpappap": 0.4652247428894043,
+ "ABplpappp->ABplpapppa": 0.40993422269821167,
+ "ABplpappp->ABplpapppp": 0.4652247428894043,
+ "ABplppaa->ABplppaaa": 0.40993422269821167,
+ "ABplppaap->ABplppaapa": 0.4652247428894043,
+ "ABplppaap->ABplppaapp": 0.4652247428894043,
+ "ABplppapa->ABplppapaa": 0.4652247428894043,
+ "ABplppapa->ABplppapap": 0.4652247428894043,
+ "ABplppap->ABplppapp": 0.40993422269821167,
+ "ABplpppaa->ABplpppaaa": 0.4652247428894043,
+ "ABplpppaa->ABplpppaap": 0.4652247428894043,
+ "ABplpppap->ABplpppapa": 0.4652247428894043,
+ "ABplpppap->ABplpppapp": 0.4652247428894043,
+ "ABplppppa->ABplppppaa": 0.4652247428894043,
+ "ABplppppa->ABplppppap": 0.4652247428894043,
+ "ABplppppp->ABplpppppa": 0.4652247428894043,
+ "ABplppppp->ABplpppppp": 0.40993422269821167,
+ "ABpraaaa->ABpraaaaa": 0.40993422269821167,
+ "ABpraaaap->ABpraaaapa": 0.5572793483734131,
+ "ABpraaaap->ABpraaaapp": 0.5572793483734131,
+ "ABpraaapa->ABpraaapaa": 0.4652247428894043,
+ "ABpraaapa->ABpraaapap": 0.4652247428894043,
+ "ABpraaapp->ABpraaappa": 0.4652247428894043,
+ "ABpraaapp->ABpraaappp": 0.4652247428894043,
+ "ABpraapaa->ABpraapaaa": 0.4652247428894043,
+ "ABpraapaa->ABpraapaap": 0.4652247428894043,
+ "ABpraapap->ABpraapapa": 0.5572793483734131,
+ "ABpraapap->ABpraapapp": 0.5572793483734131,
+ "ABpraappa->ABpraappaa": 0.5572793483734131,
+ "ABpraappa->ABpraappap": 0.5572793483734131,
+ "ABpraappp->ABpraapppa": 0.5572793483734131,
+ "ABpraappp->ABpraapppp": 0.40993422269821167,
+ "ABprapaaa->ABprapaaaa": 0.4652247428894043,
+ "ABprapaaa->ABprapaaap": 0.4652247428894043,
+ "ABprapaa->ABprapaap": 0.40993422269821167,
+ "ABprapapa->ABprapapaa": 0.4652247428894043,
+ "ABprapapa->ABprapapap": 0.4652247428894043,
+ "ABprapapp->ABprapappa": 0.40993422269821167,
+ "ABprapapp->ABprapappp": 0.40993422269821167,
+ "ABprappaa->ABprappaaa": 0.4652247428894043,
+ "ABprappaa->ABprappaap": 0.4652247428894043,
+ "ABprappap->ABprappapa": 0.4652247428894043,
+ "ABprappap->ABprappapp": 0.4652247428894043,
+ "ABprappp->ABprapppa": 0.4652247428894043,
+ "ABprappp->ABprapppp": 0.40993422269821167,
+ "ABprpaaaa->ABprpaaaaa": 0.5572793483734131,
+ "ABprpaaaa->ABprpaaaap": 0.5572793483734131,
+ "ABprpaaap->ABprpaaapa": 0.4652247428894043,
+ "ABprpaaap->ABprpaaapp": 0.4652247428894043,
+ "ABprpaapa->ABprpaapaa": 0.4652247428894043,
+ "ABprpaapa->ABprpaapap": 0.4652247428894043,
+ "ABprpaapp->ABprpaappa": 0.4652247428894043,
+ "ABprpaapp->ABprpaappp": 0.4652247428894043,
+ "ABprpapa->ABprpapaa": 0.40993422269821167,
+ "ABprpapap->ABprpapapa": 0.4652247428894043,
+ "ABprpapap->ABprpapapp": 0.4652247428894043,
+ "ABprpappa->ABprpappaa": 0.4652247428894043,
+ "ABprpappa->ABprpappap": 0.4652247428894043,
+ "ABprpappp->ABprpapppa": 0.4652247428894043,
+ "ABprpappp->ABprpapppp": 0.4652247428894043,
+ "ABprppaa->ABprppaaa": 0.5572793483734131,
+ "ABprppaa->ABprppaap": 0.40993422269821167,
+ "ABprppapa->ABprppapaa": 0.5572793483734131,
+ "ABprppapa->ABprppapap": 0.5572793483734131,
+ "ABprppap->ABprppapp": 0.40993422269821167,
+ "ABprpppaa->ABprpppaaa": 0.40993422269821167,
+ "ABprpppaa->ABprpppaap": 0.40993422269821167,
+ "ABprpppap->ABprpppapa": 0.5572793483734131,
+ "ABprpppap->ABprpppapp": 0.5572793483734131,
+ "ABprppppa->ABprppppaa": 0.6432212591171265,
+ "ABprppppa->ABprppppap": 0.40993422269821167,
+ "ABprppppp->ABprpppppa": 0.5572793483734131,
+ "ABprppppp->ABprpppppp": 0.5572793483734131,
+ "MSaaaaa->MSaaaaaa": 0.5572793483734131,
+ "MSaaaaa->MSaaaaap": 0.5572793483734131,
+ "MSaaaap->MSaaaapa": 0.5572793483734131,
+ "MSaaaap->MSaaaapp": 0.40993422269821167,
+ "MSaaapa->MSaaapaa": 0.5572793483734131,
+ "MSaaapa->MSaaapap": 0.5572793483734131,
+ "MSaaap->MSaaapp": 0.40993422269821167,
+ "MSaapaa->MSaapaaa": 0.5572793483734131,
+ "MSaapaa->MSaapaap": 0.5572793483734131,
+ "MSaapa->MSaapap": 0.40993422269821167,
+ "MSaapp->MSaappa": 0.5572793483734131,
+ "MSaapp->MSaappp": 0.5572793483734131,
+ "MSapaa->MSapaaa": 0.5572793483734131,
+ "MSapaa->MSapaap": 0.5572793483734131,
+ "MSapap->MSapapa": 0.5572793483734131,
+ "MSapap->MSapapp": 0.5572793483734131,
+ "MSappa->MSappaa": 0.4652247428894043,
+ "MSappa->MSappap": 0.4652247428894043,
+ "MSappp->MSapppa": 0.4652247428894043,
+ "MSappp->MSapppp": 0.4652247428894043,
+ "MSpaaaa->MSpaaaaa": 0.4652247428894043,
+ "MSpaaaa->MSpaaaap": 0.40993422269821167,
+ "MSpaaap->MSpaaapa": 0.4652247428894043,
+ "MSpaaap->MSpaaapp": 0.4652247428894043,
+ "MSpaap->MSpaapa": 0.4652247428894043,
+ "MSpaap->MSpaapp": 0.4652247428894043,
+ "MSpapaa->MSpapaaa": 0.6432212591171265,
+ "MSpapaa->MSpapaap": 0.6432212591171265,
+ "MSpapa->MSpapap": 0.40993422269821167,
+ "MSpapp->MSpappa": 0.4652247428894043,
+ "MSpapp->MSpappp": 0.4652247428894043,
+ "MSppaa->MSppaaa": 0.4652247428894043,
+ "MSppaa->MSppaap": 0.4652247428894043,
+ "MSppap->MSppapa": 0.6432212591171265,
+ "MSppap->MSppapp": 0.6432212591171265,
+ "MSpppa->MSpppaa": 0.6432212591171265,
+ "MSpppa->MSpppap": 0.6432212591171265,
+ "MSpppp->MSppppa": 0.6432212591171265,
+ "MSpppp->MSppppp": 0.6432212591171265,
+ "Eala->Ealaa": 0.5572793483734131,
+ "Eala->Ealap": 0.40993422269821167,
+ "Ealp->Ealpa": 0.5572793483734131,
+ "Ealp->Ealpp": 0.5572793483734131,
+ "Eara->Earaa": 0.5572793483734131,
+ "Eara->Earap": 0.40993422269821167,
+ "Earp->Earpa": 0.5572793483734131,
+ "Earp->Earpp": 0.5572793483734131,
+ "Epla->Eplaa": 0.5572793483734131,
+ "Epla->Eplap": 0.40993422269821167,
+ "Epl->Eplp": 0.40993422269821167,
+ "Epra->Epraa": 0.5572793483734131,
+ "Epra->Eprap": 0.5572793483734131,
+ "Eprp->Eprpa": 0.40993422269821167,
+ "Eprp->Eprpp": 0.5572793483734131,
+ "Caaaa->Caaaaa": 0.40993422269821167,
+ "Caaaa->Caaaap": 0.5572793483734131,
+ "Caaap->Caaapa": 0.40993422269821167,
+ "Caaap->Caaapp": 0.6432212591171265,
+ "Caap->Caapa": 0.6432212591171265,
+ "Caap->Caapp": 0.40993422269821167,
+ "Capa->Capaa": 0.6432212591171265,
+ "Capa->Capap": 0.40993422269821167,
+ "Capp->Cappa": 0.6432212591171265,
+ "Capp->Cappp": 0.40993422269821167,
+ "Cpaaa->Cpaaaa": 0.40993422269821167,
+ "Cpaaa->Cpaaap": 0.6432212591171265,
+ "Cpaap->Cpaapa": 0.40993422269821167,
+ "Cpaap->Cpaapp": 0.40993422269821167,
+ "Cpapa->Cpapaa": 0.5572793483734131,
+ "Cpapa->Cpapap": 0.40993422269821167,
+ "Cpapp->Cpappd": 0.5572793483734131,
+ "Cpapp->Cpappv": 0.40993422269821167,
+ "Cppa->Cppaa": 0.5572793483734131,
+ "Cppa->Cppap": 0.5572793483734131,
+ "Cppp->Cpppa": 0.5572793483734131,
+ "Cppp->Cpppp": 0.40993422269821167,
+ "Daa->Daaa": 0.5572793483734131,
+ "Daa->Daap": 0.5572793483734131,
+ "Dap->Dapa": 0.5572793483734131,
+ "Dap->Dapp": 0.5572793483734131,
+ "Dpa->Dpaa": 0.5572793483734131,
+ "Dpa->Dpap": 0.5572793483734131,
+ "Dpp->Dppa": 0.5572793483734131,
+ "Dpp->Dppp": 0.5572793483734131
+ }
+ }
+ ]
+ }
+}
\ No newline at end of file
diff --git a/Spatio-Temporal-Evolution/checkpoints/estgel/history.json b/Spatio-Temporal-Evolution/checkpoints/estgel/history.json
new file mode 100644
index 0000000..495fe8f
--- /dev/null
+++ b/Spatio-Temporal-Evolution/checkpoints/estgel/history.json
@@ -0,0 +1,42 @@
+[
+ {
+ "epoch": 1,
+ "train_loss": 0.6955549109440583,
+ "train_acc": 0.44711538461538464,
+ "val_loss": 0.6616136420231599,
+ "val_acc": 0.9615384615384616,
+ "elapsed_s": 378.5376885000005
+ },
+ {
+ "epoch": 2,
+ "train_loss": 0.607779846741603,
+ "train_acc": 0.9615384615384616,
+ "val_loss": 0.5515720248222351,
+ "val_acc": 0.9615384615384616,
+ "elapsed_s": 299.2748069999943
+ },
+ {
+ "epoch": 3,
+ "train_loss": 0.48659148969902444,
+ "train_acc": 0.9615384615384616,
+ "val_loss": 0.4266067181642239,
+ "val_acc": 0.9615384615384616,
+ "elapsed_s": 302.3933692999999
+ },
+ {
+ "epoch": 4,
+ "train_loss": 0.37046405465270466,
+ "train_acc": 0.9615384615384616,
+ "val_loss": 0.31965529402861226,
+ "val_acc": 0.9615384615384616,
+ "elapsed_s": 305.36022129999765
+ },
+ {
+ "epoch": 5,
+ "train_loss": 0.2840085668990818,
+ "train_acc": 0.9615384615384616,
+ "val_loss": 0.2491073992389899,
+ "val_acc": 0.9615384615384616,
+ "elapsed_s": 306.946646700002
+ }
+]
\ No newline at end of file
diff --git a/Spatio-Temporal-Evolution/checkpoints/estgel/training_curves.png b/Spatio-Temporal-Evolution/checkpoints/estgel/training_curves.png
new file mode 100644
index 0000000..b36720a
Binary files /dev/null and b/Spatio-Temporal-Evolution/checkpoints/estgel/training_curves.png differ
diff --git a/Spatio-Temporal-Evolution/dashboard/app.js b/Spatio-Temporal-Evolution/dashboard/app.js
new file mode 100644
index 0000000..08fa110
--- /dev/null
+++ b/Spatio-Temporal-Evolution/dashboard/app.js
@@ -0,0 +1,415 @@
+// =========================================================================
+// ESTGEL 3D Visualisation Dashboard - Core Logic
+// =========================================================================
+
+let embryoData = null;
+let explainabilityReport = null;
+
+let currentPhenotype = "wt"; // "wt" or "rnai"
+let currentTimeStep = 30;
+
+// Three.js global variables
+let scene, camera, renderer, controls;
+let cellGroup, edgeGroup;
+
+// Chart.js global variables
+let growthChart = null;
+let attentionChart = null;
+let selectedInteraction = "ABalaaaal->ABalaaaar";
+
+// Helper function to color code cell lineages
+function getLineageColor(cellName) {
+ if (cellName.startsWith("AB")) {
+ return 0x00f2fe; // Cyan
+ } else if (cellName.startsWith("MS")) {
+ return 0xffd200; // Yellow
+ } else if (cellName.startsWith("E")) {
+ return 0x00e676; // Green
+ } else if (cellName.startsWith("C")) {
+ return 0xff9100; // Orange
+ } else if (cellName.startsWith("D")) {
+ return 0xf50057; // Pink
+ } else if (cellName.startsWith("P")) {
+ return 0xff1744; // Red
+ }
+ return 0xa0aec0; // Gray
+}
+
+// Helper to calculate average attention weight
+function getAverageAttention(attentions) {
+ const vals = Object.values(attentions);
+ if (vals.length === 0) return 0.0;
+ const sum = vals.reduce((a, b) => a + b, 0);
+ return sum / vals.length;
+}
+
+// Set up Three.js 3D Viewport
+function init3D() {
+ const container = document.getElementById("three-canvas-container");
+ const width = container.clientWidth;
+ const height = container.clientHeight;
+
+ scene = new THREE.Scene();
+ scene.background = new THREE.Color(0x080a0f);
+
+ camera = new THREE.PerspectiveCamera(45, width / height, 1, 1000);
+ // Align camera viewport dynamically
+ camera.position.set(100, 100, 300);
+
+ renderer = new THREE.WebGLRenderer({ antialias: true });
+ renderer.setSize(width, height);
+ container.appendChild(renderer.domElement);
+
+ controls = new THREE.OrbitControls(camera, renderer.domElement);
+ controls.enableDamping = true;
+ controls.dampingFactor = 0.05;
+ controls.maxPolarAngle = Math.PI;
+
+ // Add lighting
+ const ambientLight = new THREE.AmbientLight(0x222233);
+ scene.add(ambientLight);
+
+ const dirLight = new THREE.DirectionalLight(0xffffff, 1.2);
+ dirLight.position.set(200, 400, 300);
+ scene.add(dirLight);
+
+ const pointLight = new THREE.PointLight(0xffffff, 0.8, 500);
+ pointLight.position.set(0, 0, 0);
+ camera.add(pointLight);
+ scene.add(camera);
+
+ // Add Coordinate Grid Floor
+ const gridHelper = new THREE.GridHelper(400, 40, 0x4a5568, 0x1a202c);
+ gridHelper.position.y = -80;
+ scene.add(gridHelper);
+
+ cellGroup = new THREE.Group();
+ edgeGroup = new THREE.Group();
+ scene.add(cellGroup);
+ scene.add(edgeGroup);
+
+ // Handle window resize
+ window.addEventListener("resize", () => {
+ const w = container.clientWidth;
+ const h = container.clientHeight;
+ camera.aspect = w / h;
+ camera.updateProjectionMatrix();
+ renderer.setSize(w, h);
+ });
+
+ animate();
+}
+
+function animate() {
+ requestAnimationFrame(animate);
+ controls.update();
+ renderer.render(scene, camera);
+}
+
+// Render the 3D cell nodes and attention lines for a given timestep
+function update3DView() {
+ if (!embryoData || !explainabilityReport) return;
+
+ // 1. Clear previous meshes
+ while (cellGroup.children.length > 0) {
+ const obj = cellGroup.children[0];
+ obj.geometry.dispose();
+ obj.material.dispose();
+ cellGroup.remove(obj);
+ }
+ while (edgeGroup.children.length > 0) {
+ const obj = edgeGroup.children[0];
+ obj.geometry.dispose();
+ obj.material.dispose();
+ edgeGroup.remove(obj);
+ }
+
+ const typeKey = currentPhenotype; // "wt" or "rnai"
+ const tsKey = String(currentTimeStep);
+ const stepCells = embryoData[typeKey].timesteps[tsKey] || [];
+
+ // Map to quickly look up cell coordinates in 3D
+ const cellPosMap = {};
+
+ // Center of coordinates calculations for camera target focus
+ let cx = 0, cy = 0, cz = 0;
+
+ // 2. Draw Cell Nuclei Spheres
+ stepCells.forEach(cell => {
+ const [x, y, z] = cell.pos;
+ cx += x;
+ cy += y;
+ cz += z;
+
+ cellPosMap[cell.name] = new THREE.Vector3(x, y, z);
+
+ // Normalize and scale visual size
+ const radius = Math.max(3, cell.size * 0.4);
+ const geometry = new THREE.SphereGeometry(radius, 16, 16);
+
+ // Color based on cell lineage (AB, MS, E, C, D)
+ const hexColor = getLineageColor(cell.name);
+ const material = new THREE.MeshPhongMaterial({
+ color: hexColor,
+ shininess: 80,
+ specular: 0x333333
+ });
+
+ const sphere = new THREE.Mesh(geometry, material);
+ sphere.position.set(x, y, z);
+ cellGroup.add(sphere);
+ });
+
+ // Reposition OrbitControls target to center of active cell mass
+ if (stepCells.length > 0) {
+ controls.target.set(cx / stepCells.length, cy / stepCells.length, cz / stepCells.length);
+ }
+
+ // 3. Draw Explainability Attention Edges
+ const reportKey = currentPhenotype + "_embryo";
+ const stepAttentions = explainabilityReport[reportKey].data.find(
+ d => d.timestep === currentTimeStep
+ );
+
+ let activeEdgesCount = 0;
+ let avgAttentionVal = 0.0;
+
+ if (stepAttentions && stepAttentions.attentions) {
+ const attentions = stepAttentions.attentions;
+ activeEdgesCount = Object.keys(attentions).length;
+ avgAttentionVal = getAverageAttention(attentions);
+
+ const edgeColor = currentPhenotype === "wt" ? 0x00f2fe : 0xff0844;
+
+ Object.entries(attentions).forEach(([connection, weight]) => {
+ const [srcName, dstName] = connection.split("->");
+ const srcPos = cellPosMap[srcName];
+ const dstPos = cellPosMap[dstName];
+
+ if (srcPos && dstPos) {
+ // Line weight maps to GNN attention weight
+ const material = new THREE.LineBasicMaterial({
+ color: edgeColor,
+ linewidth: weight * 3,
+ transparent: true,
+ opacity: Math.max(0.15, weight)
+ });
+
+ const points = [srcPos, dstPos];
+ const geometry = new THREE.BufferGeometry().setFromPoints(points);
+ const line = new THREE.Line(geometry, material);
+ edgeGroup.add(line);
+ }
+ });
+
+ // Update Top-5 sidebar interactions list
+ updateSidebarList(attentions);
+ } else {
+ updateSidebarList({});
+ }
+
+ // Update Stats Display panel
+ document.getElementById("stat-nodes").innerText = stepCells.length;
+ document.getElementById("stat-edges").innerText = activeEdgesCount;
+ document.getElementById("stat-avg-att").innerText = avgAttentionVal.toFixed(3);
+}
+
+// Render Top-5 GNN attention connections in the control panel
+function updateSidebarList(attentions) {
+ const list = document.getElementById("interaction-list");
+ list.innerHTML = "";
+
+ const sortedAtts = Object.entries(attentions)
+ .sort((a, b) => b[1] - a[1])
+ .slice(0, 5);
+
+ if (sortedAtts.length === 0) {
+ list.innerHTML = `No active connections at t=${currentTimeStep}`;
+ return;
+ }
+
+ sortedAtts.forEach(([connection, weight]) => {
+ const li = document.createElement("li");
+ li.className = "interaction-item";
+ li.style.cursor = "pointer";
+ li.innerHTML = `
+ ${connection}
+ ${weight.toFixed(4)}
+ `;
+
+ // Clicking on an interaction details updates the Attention Trajectory Contrast Chart
+ li.addEventListener("click", () => {
+ selectedInteraction = connection;
+ updateAttentionChart();
+ });
+
+ list.appendChild(li);
+ });
+}
+
+// Chart 1: Active Cell Growth curve using Chart.js
+function initGrowthChart() {
+ const ctx = document.getElementById("growthChart").getContext("2d");
+
+ // Prepare time steps and counts
+ const steps = [30, 60, 90, 120, 150, 180];
+ const wtCounts = steps.map(t => (embryoData.wt.timesteps[String(t)] || []).length);
+ const rnaiCounts = steps.map(t => (embryoData.rnai.timesteps[String(t)] || []).length);
+
+ growthChart = new Chart(ctx, {
+ type: "line",
+ data: {
+ labels: steps.map(t => `t=${t}`),
+ datasets: [
+ {
+ label: "Control (WT)",
+ data: wtCounts,
+ borderColor: "#4facfe",
+ backgroundColor: "rgba(79, 172, 254, 0.1)",
+ borderWidth: 2,
+ tension: 0.2,
+ fill: true
+ },
+ {
+ label: "Perturbed (RNAi)",
+ data: rnaiCounts,
+ borderColor: "#ff0844",
+ backgroundColor: "rgba(255, 8, 68, 0.1)",
+ borderWidth: 2,
+ borderDash: [4, 4],
+ tension: 0.2,
+ fill: true
+ }
+ ]
+ },
+ options: {
+ responsive: true,
+ maintainAspectRatio: false,
+ plugins: {
+ legend: { labels: { color: "#a0aec0", font: { family: "Outfit" } } }
+ },
+ scales: {
+ x: { grid: { color: "rgba(255,255,255,0.05)" }, ticks: { color: "#718096" } },
+ y: { grid: { color: "rgba(255,255,255,0.05)" }, ticks: { color: "#718096" } }
+ }
+ }
+ });
+}
+
+// Chart 2: EAM Attention Trajectory Contrast (WT vs. RNAi)
+function updateAttentionChart() {
+ const ctx = document.getElementById("attentionChart").getContext("2d");
+
+ const steps = [30, 60, 90, 120, 150, 180];
+
+ // Extract trajectories for WT
+ const wtVals = steps.map(t => {
+ const step = explainabilityReport.wt_embryo.data.find(d => d.timestep === t);
+ return step ? (step.attentions[selectedInteraction] || 0.0) : 0.0;
+ });
+
+ // Extract trajectories for RNAi
+ const rnaiVals = steps.map(t => {
+ const step = explainabilityReport.rnai_embryo.data.find(d => d.timestep === t);
+ return step ? (step.attentions[selectedInteraction] || 0.0) : 0.0;
+ });
+
+ if (attentionChart) {
+ attentionChart.destroy();
+ }
+
+ attentionChart = new Chart(ctx, {
+ type: "line",
+ data: {
+ labels: steps.map(t => `t=${t}`),
+ datasets: [
+ {
+ label: `WT: ${selectedInteraction}`,
+ data: wtVals,
+ borderColor: "#00f2fe",
+ backgroundColor: "#00f2fe",
+ borderWidth: 3,
+ pointRadius: 4,
+ tension: 0.1
+ },
+ {
+ label: `RNAi: ${selectedInteraction}`,
+ data: rnaiVals,
+ borderColor: "#ff0844",
+ backgroundColor: "#ff0844",
+ borderWidth: 3,
+ borderDash: [5, 5],
+ pointRadius: 4,
+ tension: 0.1
+ }
+ ]
+ },
+ options: {
+ responsive: true,
+ maintainAspectRatio: false,
+ plugins: {
+ legend: { labels: { color: "#a0aec0", font: { family: "Outfit" } } }
+ },
+ scales: {
+ x: { grid: { color: "rgba(255,255,255,0.05)" }, ticks: { color: "#718096" } },
+ y: { min: 0.0, max: 1.0, grid: { color: "rgba(255,255,255,0.05)" }, ticks: { color: "#718096" } }
+ }
+ }
+ });
+}
+
+// Fetch JSON data and initialize elements
+async function initDashboard() {
+ try {
+ console.log("Loading dashboard data...");
+ const [embryoRes, explainRes] = await Promise.all([
+ fetch("embryo_data.json"),
+ fetch("explainability_report.json")
+ ]);
+
+ embryoData = await embryoRes.json();
+ explainabilityReport = await explainRes.json();
+
+ console.log("Data loaded successfully.");
+
+ // Initialize visualization components
+ init3D();
+ initGrowthChart();
+ updateAttentionChart();
+ update3DView();
+
+ // Setup HTML UI Event Listeners
+ const btnWt = document.getElementById("btn-wt");
+ const btnRnai = document.getElementById("btn-rnai");
+ const slider = document.getElementById("time-slider");
+ const timeVal = document.getElementById("current-time-val");
+
+ btnWt.addEventListener("click", () => {
+ btnWt.classList.add("active");
+ btnRnai.classList.remove("active");
+ currentPhenotype = "wt";
+ update3DView();
+ });
+
+ btnRnai.addEventListener("click", () => {
+ btnRnai.classList.add("active");
+ btnWt.classList.remove("active");
+ currentPhenotype = "rnai";
+ update3DView();
+ });
+
+ slider.addEventListener("input", (e) => {
+ currentTimeStep = parseInt(e.target.value);
+ timeVal.innerText = currentTimeStep;
+ update3DView();
+ });
+
+ } catch (err) {
+ console.error("Error loading dashboard data:", err);
+ document.body.innerHTML = `
+ Error loading JSON data. Did you run the exporter script (python scripts/export_ui_data.py)?
+
`;
+ }
+}
+
+window.addEventListener("DOMContentLoaded", initDashboard);
diff --git a/Spatio-Temporal-Evolution/dashboard/embryo_data.json b/Spatio-Temporal-Evolution/dashboard/embryo_data.json
new file mode 100644
index 0000000..7237f92
--- /dev/null
+++ b/Spatio-Temporal-Evolution/dashboard/embryo_data.json
@@ -0,0 +1,12578 @@
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+}
\ No newline at end of file
diff --git a/Spatio-Temporal-Evolution/dashboard/explainability_report.json b/Spatio-Temporal-Evolution/dashboard/explainability_report.json
new file mode 100644
index 0000000..9dacef8
--- /dev/null
+++ b/Spatio-Temporal-Evolution/dashboard/explainability_report.json
@@ -0,0 +1,2365 @@
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+ }
+ },
+ {
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+ "D->Dp": 0.8292930126190186
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+ {
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+ "ABplppaa->ABplppaaa": 0.6432212591171265,
+ "ABplppaa->ABplppaap": 0.6432212591171265,
+ "ABplppap->ABplppapa": 0.761333703994751,
+ "ABplppap->ABplppapp": 0.761333703994751,
+ "ABplpppa->ABplpppaa": 0.761333703994751,
+ "ABplpppa->ABplpppap": 0.761333703994751,
+ "ABplpppp->ABplppppa": 0.761333703994751,
+ "ABplpppp->ABplppppp": 0.6432212591171265,
+ "ABpraaaa->ABpraaaaa": 0.761333703994751,
+ "ABpraaaa->ABpraaaap": 0.6432212591171265,
+ "ABpraaap->ABpraaapa": 0.6432212591171265,
+ "ABpraaap->ABpraaapp": 0.761333703994751,
+ "ABpraapa->ABpraapaa": 0.8292930126190186,
+ "ABpraapa->ABpraapap": 0.8292930126190186,
+ "ABpraapp->ABpraappa": 0.761333703994751,
+ "ABpraapp->ABpraappp": 0.761333703994751,
+ "ABprapaa->ABprapaaa": 0.8292930126190186,
+ "ABprapaa->ABprapaap": 0.8292930126190186,
+ "ABprapap->ABprapapa": 0.8292930126190186,
+ "ABprapap->ABprapapp": 0.8292930126190186,
+ "ABprappa->ABprappaa": 0.8292930126190186,
+ "ABprappa->ABprappap": 0.8292930126190186,
+ "ABprappp->ABprapppa": 0.6432212591171265,
+ "ABprappp->ABprapppp": 0.8292930126190186,
+ "ABprpaaa->ABprpaaaa": 0.6432212591171265,
+ "ABprpaaa->ABprpaaap": 0.6432212591171265,
+ "ABprpaap->ABprpaapa": 0.6432212591171265,
+ "ABprpaap->ABprpaapp": 0.6432212591171265,
+ "ABprpapa->ABprpapaa": 0.6432212591171265,
+ "ABprpapa->ABprpapap": 0.6432212591171265,
+ "ABprpapp->ABprpappa": 0.6432212591171265,
+ "ABprpapp->ABprpappp": 0.761333703994751,
+ "ABprppaa->ABprppaaa": 0.761333703994751,
+ "ABprppaa->ABprppaap": 0.761333703994751,
+ "ABprppap->ABprppapa": 0.761333703994751,
+ "ABprppap->ABprppapp": 0.761333703994751,
+ "ABprpppa->ABprpppaa": 0.8292930126190186,
+ "ABprpppa->ABprpppap": 0.6432212591171265,
+ "ABprpppp->ABprppppa": 0.761333703994751,
+ "ABprpppp->ABprppppp": 0.6432212591171265,
+ "MSaaa->MSaaaa": 0.761333703994751,
+ "MSaaa->MSaaap": 0.761333703994751,
+ "MSaap->MSaapa": 0.761333703994751,
+ "MSaap->MSaapp": 0.761333703994751,
+ "MSapa->MSapaa": 0.761333703994751,
+ "MSapa->MSapap": 0.761333703994751,
+ "MSapp->MSappa": 0.6432212591171265,
+ "MSapp->MSappp": 0.6432212591171265,
+ "MSpaa->MSpaaa": 0.6432212591171265,
+ "MSpaa->MSpaap": 0.761333703994751,
+ "MSpap->MSpapa": 0.6432212591171265,
+ "MSpap->MSpapp": 0.6432212591171265,
+ "MSppa->MSppaa": 0.761333703994751,
+ "MSppa->MSppap": 0.761333703994751,
+ "MSppp->MSpppa": 0.8292930126190186,
+ "MSppp->MSpppp": 0.761333703994751,
+ "Eal->Eala": 0.8292930126190186,
+ "Eal->Ealp": 0.8292930126190186,
+ "Ear->Eara": 0.761333703994751,
+ "Ear->Earp": 0.6432212591171265,
+ "Epl->Epla": 0.6432212591171265,
+ "Epl->Eplp": 0.6432212591171265,
+ "Epr->Epra": 0.6432212591171265,
+ "Epr->Eprp": 0.6432212591171265,
+ "Caaa->Caaaa": 0.761333703994751,
+ "Caaa->Caaap": 0.6432212591171265,
+ "Caa->Caap": 0.6432212591171265,
+ "Cap->Capa": 0.6432212591171265,
+ "Cap->Capp": 0.6432212591171265,
+ "Cpaa->Cpaaa": 0.8292930126190186,
+ "Cpaa->Cpaap": 0.8292930126190186,
+ "Cpap->Cpapa": 0.6432212591171265,
+ "Cpap->Cpapp": 0.6432212591171265,
+ "Cpp->Cppa": 0.6432212591171265,
+ "Cppp->Cpppa": 0.6432212591171265,
+ "Cppp->Cpppp": 0.6432212591171265,
+ "Da->Daa": 0.761333703994751,
+ "Da->Dap": 0.6432212591171265,
+ "Dp->Dpa": 0.6432212591171265,
+ "Dp->Dpp": 0.761333703994751
+ }
+ },
+ {
+ "timestep": 180,
+ "attentions": {
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+ "ABalpaapaa->ABalaaapa": 0.8292930126190186,
+ "ABalaaapp->ABaraaaaa": 0.8292930126190186,
+ "ABaraaaaa->ABalaaapp": 0.8292930126190186,
+ "ABalaapap->ABalaappa": 0.8292930126190186,
+ "ABalaappa->ABalaapap": 0.8292930126190186,
+ "ABalaapap->ABalaappp": 0.8292930126190186,
+ "ABalaappp->ABalaapap": 0.8292930126190186,
+ "ABalapaap->ABplaaaaa": 0.8292930126190186,
+ "ABplaaaaa->ABalapaap": 0.8292930126190186,
+ "ABalapapa->ABaraapaa": 0.8292930126190186,
+ "ABaraapaa->ABalapapa": 0.8292930126190186,
+ "ABalapapp->ABplaaaap": 0.8292930126190186,
+ "ABplaaaap->ABalapapp": 0.8292930126190186,
+ "ABalappaa->MSaaaaa": 0.8292930126190186,
+ "MSaaaaa->ABalappaa": 0.8292930126190186,
+ "ABalappap->ABaraaapa": 0.8292930126190186,
+ "ABaraaapa->ABalappap": 0.8292930126190186,
+ "ABalapppp->ABarappaa": 0.9123597741127014,
+ "ABarappaa->ABalapppp": 0.9123597741127014,
+ "ABalapppp->ABarpapap": 0.9123597741127014,
+ "ABarpapap->ABalapppp": 0.9123597741127014,
+ "ABalapppp->MSppaap": 1.0,
+ "MSppaap->ABalapppp": 1.0,
+ "ABalpaaaa->MSaaaaa": 0.8292930126190186,
+ "MSaaaaa->ABalpaaaa": 0.8292930126190186,
+ "ABalpaaap->MSaaaap": 0.8292930126190186,
+ "MSaaaap->ABalpaaap": 0.8292930126190186,
+ "ABalpaapp->ABalppaaa": 0.9123597741127014,
+ "ABalppaaa->ABalpaapp": 0.9123597741127014,
+ "ABalpaapp->ABalpppaa": 0.9123597741127014,
+ "ABalpppaa->ABalpaapp": 0.9123597741127014,
+ "ABalpapaa->MSapaaa": 0.8292930126190186,
+ "MSapaaa->ABalpapaa": 0.8292930126190186,
+ "ABalpapap->MSapaap": 0.8292930126190186,
+ "MSapaap->ABalpapap": 0.8292930126190186,
+ "ABalpapppa->ABarapapa": 0.8292930126190186,
+ "ABarapapa->ABalpapppa": 0.8292930126190186,
+ "ABalppaaa->ABalpppaa": 0.9123597741127014,
+ "ABalpppaa->ABalppaaa": 0.9123597741127014,
+ "ABalppaap->ABalpppap": 0.9123597741127014,
+ "ABalpppap->ABalppaap": 0.9123597741127014,
+ "ABalppapa->ABplaapaa": 0.9123597741127014,
+ "ABplaapaa->ABalppapa": 0.9123597741127014,
+ "ABalppapp->ABalppppp": 0.9123597741127014,
+ "ABalppppp->ABalppapp": 0.9123597741127014,
+ "ABalppapp->ABplpaaaa": 0.9123597741127014,
+ "ABplpaaaa->ABalppapp": 0.9123597741127014,
+ "ABalppppa->ABplaapaa": 0.9123597741127014,
+ "ABplaapaa->ABalppppa": 0.9123597741127014,
+ "ABalppppp->ABplpaaaa": 0.9123597741127014,
+ "ABplpaaaa->ABalppppp": 0.9123597741127014,
+ "ABalppppp->ABplpaapa": 0.9123597741127014,
+ "ABplpaapa->ABalppppp": 0.9123597741127014,
+ "ABaraaapp->MSppaaa": 0.9123597741127014,
+ "MSppaaa->ABaraaapp": 0.9123597741127014,
+ "ABaraapaa->ABarpaaaa": 0.9123597741127014,
+ "ABarpaaaa->ABaraapaa": 0.9123597741127014,
+ "ABaraappp->MSpaapa": 0.8292930126190186,
+ "MSpaapa->ABaraappp": 0.8292930126190186,
+ "ABarapaap->MSpaaap": 0.8292930126190186,
+ "MSpaaap->ABarapaap": 0.8292930126190186,
+ "ABarapapa->ABarpaapa": 0.9123597741127014,
+ "ABarpaapa->ABarapapa": 0.9123597741127014,
+ "ABarappaa->MSppaap": 0.9123597741127014,
+ "MSppaap->ABarappaa": 0.9123597741127014,
+ "ABarappap->MSppapa": 0.9123597741127014,
+ "MSppapa->ABarappap": 0.9123597741127014,
+ "ABarapppp->ABpraaapp": 0.9123597741127014,
+ "ABpraaapp->ABarapppp": 0.9123597741127014,
+ "ABarapppp->ABprpaaaa": 0.9123597741127014,
+ "ABprpaaaa->ABarapppp": 0.9123597741127014,
+ "ABarpaapp->MSpaapp": 0.9123597741127014,
+ "MSpaapp->ABarpaapp": 0.9123597741127014,
+ "ABarpaapp->Eara": 0.9123597741127014,
+ "Eara->ABarpaapp": 0.9123597741127014,
+ "ABarpapap->MSppaap": 0.9123597741127014,
+ "MSppaap->ABarpapap": 0.9123597741127014,
+ "ABarpappa->MSppapa": 0.9123597741127014,
+ "MSppapa->ABarpappa": 0.9123597741127014,
+ "ABarpappp->ABprpapaa": 0.9123597741127014,
+ "ABprpapaa->ABarpappp": 0.9123597741127014,
+ "ABarpappp->MSppapp": 0.9123597741127014,
+ "MSppapp->ABarpappp": 0.9123597741127014,
+ "ABarpppap->MSppppa": 0.9123597741127014,
+ "MSppppa->ABarpppap": 0.9123597741127014,
+ "ABarppppa->ABprppppa": 0.9123597741127014,
+ "ABprppppa->ABarppppa": 0.9123597741127014,
+ "ABarppppp->ABprppppp": 0.8292930126190186,
+ "ABprppppp->ABarppppp": 0.8292930126190186,
+ "ABplaaapp->ABplpappa": 0.9123597741127014,
+ "ABplpappa->ABplaaapp": 0.9123597741127014,
+ "ABplaaapp->MSappaa": 0.9123597741127014,
+ "MSappaa->ABplaaapp": 0.9123597741127014,
+ "ABplaapap->ABplpapaa": 0.8292930126190186,
+ "ABplpapaa->ABplaapap": 0.8292930126190186,
+ "ABplaapap->MSapapa": 0.8292930126190186,
+ "MSapapa->ABplaapap": 0.8292930126190186,
+ "ABplaappp->ABplppapa": 0.9123597741127014,
+ "ABplppapa->ABplaappp": 0.9123597741127014,
+ "ABplapaaa->ABplpapap": 0.8292930126190186,
+ "ABplpapap->ABplapaaa": 0.8292930126190186,
+ "ABplapaap->ABplppapp": 0.9123597741127014,
+ "ABplppapp->ABplapaap": 0.9123597741127014,
+ "ABplapaap->ABplppppa": 0.8292930126190186,
+ "ABplppppa->ABplapaap": 0.8292930126190186,
+ "ABplapapa->ABplppppp": 0.8292930126190186,
+ "ABplppppp->ABplapapa": 0.8292930126190186,
+ "ABplappap->ABplapppa": 0.9123597741127014,
+ "ABplapppa->ABplappap": 0.9123597741127014,
+ "ABplpappa->MSappaa": 0.9123597741127014,
+ "MSappaa->ABplpappa": 0.9123597741127014,
+ "ABplpappp->MSappap": 0.9123597741127014,
+ "MSappap->ABplpappp": 0.9123597741127014,
+ "ABplpappp->MSapppa": 0.8292930126190186,
+ "MSapppa->ABplpappp": 0.8292930126190186,
+ "ABplppaap->ABplppapa": 0.8292930126190186,
+ "ABplppapa->ABplppaap": 0.8292930126190186,
+ "ABplppapp->ABplpppaa": 0.8292930126190186,
+ "ABplpppaa->ABplppapp": 0.8292930126190186,
+ "ABpraaapa->MSppaaa": 0.8292930126190186,
+ "MSppaaa->ABpraaapa": 0.8292930126190186,
+ "ABpraaapp->ABpraapaa": 0.9123597741127014,
+ "ABpraapaa->ABpraaapp": 0.9123597741127014,
+ "ABpraaapp->ABprpaaaa": 1.0,
+ "ABprpaaaa->ABpraaapp": 1.0,
+ "ABpraapaa->ABprpaaaa": 0.9123597741127014,
+ "ABprpaaaa->ABpraapaa": 0.9123597741127014,
+ "ABpraapap->ABpraappa": 0.8292930126190186,
+ "ABpraappa->ABpraapap": 0.8292930126190186,
+ "ABpraapap->ABprpaaap": 0.9123597741127014,
+ "ABprpaaap->ABpraapap": 0.9123597741127014,
+ "ABpraapap->ABprpaapa": 0.9123597741127014,
+ "ABprpaapa->ABpraapap": 0.9123597741127014,
+ "ABpraappp->ABprapaaa": 0.8292930126190186,
+ "ABprapaaa->ABpraappp": 0.8292930126190186,
+ "ABprapaaa->ABprppaap": 0.8292930126190186,
+ "ABprppaap->ABprapaaa": 0.8292930126190186,
+ "ABprapaap->ABprppapa": 0.8292930126190186,
+ "ABprppapa->ABprapaap": 0.8292930126190186,
+ "ABprapapa->ABprappap": 0.8292930126190186,
+ "ABprappap->ABprapapa": 0.8292930126190186,
+ "ABprapapp->ABprapppp": 0.8292930126190186,
+ "ABprapppp->ABprapapp": 0.8292930126190186,
+ "ABprapppa->ABprpppap": 0.8292930126190186,
+ "ABprpppap->ABprapppa": 0.8292930126190186,
+ "ABprpaaap->ABprpaapa": 0.9123597741127014,
+ "ABprpaapa->ABprpaaap": 0.9123597741127014,
+ "ABprpapaa->MSppapp": 0.9123597741127014,
+ "MSppapp->ABprpapaa": 0.9123597741127014,
+ "ABprpapap->MSppppa": 0.8292930126190186,
+ "MSppppa->ABprpapap": 0.8292930126190186,
+ "ABprpappa->MSpppap": 0.8292930126190186,
+ "MSpppap->ABprpappa": 0.8292930126190186,
+ "ABprpappp->Epra": 0.8292930126190186,
+ "Epra->ABprpappp": 0.8292930126190186,
+ "ABprppapp->ABprpppaa": 0.8292930126190186,
+ "ABprpppaa->ABprppapp": 0.8292930126190186,
+ "ABprppppa->MSppppp": 0.9123597741127014,
+ "MSppppp->ABprppppa": 0.9123597741127014,
+ "MSaapaa->Eala": 0.8292930126190186,
+ "Eala->MSaapaa": 0.8292930126190186,
+ "MSaapap->MSaappa": 0.8292930126190186,
+ "MSaappa->MSaapap": 0.8292930126190186,
+ "MSappap->Ealp": 0.8292930126190186,
+ "Ealp->MSappap": 0.8292930126190186,
+ "MSapppp->Daa": 0.8292930126190186,
+ "Daa->MSapppp": 0.8292930126190186,
+ "MSpaapp->MSpapaa": 0.8292930126190186,
+ "MSpapaa->MSpaapp": 0.8292930126190186,
+ "MSpaapp->Eara": 0.9123597741127014,
+ "Eara->MSpaapp": 0.9123597741127014,
+ "MSpappa->Earp": 0.8292930126190186,
+ "Earp->MSpappa": 0.8292930126190186,
+ "Epra->Dppa": 0.8292930126190186,
+ "Dppa->Epra": 0.8292930126190186,
+ "Eprp->Dppp": 0.8292930126190186,
+ "Dppp->Eprp": 0.8292930126190186,
+ "Caapa->Caapp": 0.761333703994751,
+ "Caapp->Caapa": 0.761333703994751,
+ "Capaa->Dapa": 0.8292930126190186,
+ "Dapa->Capaa": 0.8292930126190186,
+ "Cpaap->Cpppp": 0.8292930126190186,
+ "Cpppp->Cpaap": 0.8292930126190186,
+ "Cpapa->Cpapp": 0.8292930126190186,
+ "Cpapp->Cpapa": 0.8292930126190186,
+ "ABalaaaa->ABalaaaal": 0.6432212591171265,
+ "ABalaaaa->ABalaaaar": 0.6432212591171265,
+ "ABalaaap->ABalaaapa": 0.6432212591171265,
+ "ABalaaap->ABalaaapp": 0.6432212591171265,
+ "ABalaapa->ABalaapaa": 0.5572793483734131,
+ "ABalaapa->ABalaapap": 0.761333703994751,
+ "ABalaapp->ABalaappa": 0.6432212591171265,
+ "ABalaapp->ABalaappp": 0.6432212591171265,
+ "ABalapaa->ABalapaaa": 0.6432212591171265,
+ "ABalapaa->ABalapaap": 0.761333703994751,
+ "ABalapap->ABalapapa": 0.761333703994751,
+ "ABalapap->ABalapapp": 0.761333703994751,
+ "ABalappa->ABalappaa": 0.761333703994751,
+ "ABalappa->ABalappap": 0.761333703994751,
+ "ABalappp->ABalapppa": 0.6432212591171265,
+ "ABalappp->ABalapppp": 0.761333703994751,
+ "ABalpaaa->ABalpaaaa": 0.6432212591171265,
+ "ABalpaaa->ABalpaaap": 0.6432212591171265,
+ "ABalpaapa->ABalpaapaa": 0.6432212591171265,
+ "ABalpaapa->ABalpaapap": 0.6432212591171265,
+ "ABalpaap->ABalpaapp": 0.6432212591171265,
+ "ABalpapa->ABalpapaa": 0.6432212591171265,
+ "ABalpapa->ABalpapap": 0.6432212591171265,
+ "ABalpapp->ABalpappa": 0.6432212591171265,
+ "ABalpappp->ABalpapppa": 0.6432212591171265,
+ "ABalpappp->ABalpapppp": 0.6432212591171265,
+ "ABalppaa->ABalppaaa": 0.6432212591171265,
+ "ABalppaa->ABalppaap": 0.6432212591171265,
+ "ABalppap->ABalppapa": 0.6432212591171265,
+ "ABalppap->ABalppapp": 0.6432212591171265,
+ "ABalpppa->ABalpppaa": 0.761333703994751,
+ "ABalpppa->ABalpppap": 0.761333703994751,
+ "ABalpppp->ABalppppa": 0.761333703994751,
+ "ABalpppp->ABalppppp": 0.761333703994751,
+ "ABaraaaa->ABaraaaaa": 0.761333703994751,
+ "ABaraaaa->ABaraaaap": 0.6432212591171265,
+ "ABaraaap->ABaraaapa": 0.761333703994751,
+ "ABaraaap->ABaraaapp": 0.761333703994751,
+ "ABaraapa->ABaraapaa": 0.761333703994751,
+ "ABaraapa->ABaraapap": 0.6432212591171265,
+ "ABaraapp->ABaraappa": 0.6432212591171265,
+ "ABaraapp->ABaraappp": 0.761333703994751,
+ "ABarapaa->ABarapaaa": 0.6432212591171265,
+ "ABarapaa->ABarapaap": 0.761333703994751,
+ "ABarapap->ABarapapa": 0.761333703994751,
+ "ABarapap->ABarapapp": 0.6432212591171265,
+ "ABarappa->ABarappaa": 0.761333703994751,
+ "ABarappa->ABarappap": 0.761333703994751,
+ "ABarappp->ABarapppa": 0.6432212591171265,
+ "ABarappp->ABarapppp": 0.761333703994751,
+ "ABarpaaa->ABarpaaaa": 0.761333703994751,
+ "ABarpaaa->ABarpaaap": 0.6432212591171265,
+ "ABarpaap->ABarpaapa": 0.761333703994751,
+ "ABarpaap->ABarpaapp": 0.761333703994751,
+ "ABarpapa->ABarpapaa": 0.6432212591171265,
+ "ABarpapa->ABarpapap": 0.761333703994751,
+ "ABarpapp->ABarpappa": 0.761333703994751,
+ "ABarpapp->ABarpappp": 0.761333703994751,
+ "ABarppaa->ABarppaaa": 0.6432212591171265,
+ "ABarppaa->ABarppaap": 0.6432212591171265,
+ "ABarppap->ABarppapa": 0.6432212591171265,
+ "ABarppap->ABarppapp": 0.6432212591171265,
+ "ABarpppa->ABarpppaa": 0.6432212591171265,
+ "ABarpppa->ABarpppap": 0.761333703994751,
+ "ABarpppp->ABarppppa": 0.761333703994751,
+ "ABarpppp->ABarppppp": 0.761333703994751,
+ "ABplaaaa->ABplaaaaa": 0.761333703994751,
+ "ABplaaaa->ABplaaaap": 0.761333703994751,
+ "ABplaaap->ABplaaapa": 0.6432212591171265,
+ "ABplaaap->ABplaaapp": 0.6432212591171265,
+ "ABplaapa->ABplaapaa": 0.761333703994751,
+ "ABplaapa->ABplaapap": 0.761333703994751,
+ "ABplaapp->ABplaappa": 0.6432212591171265,
+ "ABplaapp->ABplaappp": 0.761333703994751,
+ "ABplapaa->ABplapaaa": 0.761333703994751,
+ "ABplapaa->ABplapaap": 0.761333703994751,
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+ "ABplapap->ABplapapp": 0.6432212591171265,
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+ "ABplappp->ABplapppp": 0.6432212591171265,
+ "ABplpaaa->ABplpaaaa": 0.761333703994751,
+ "ABplpaaa->ABplpaaap": 0.5572793483734131,
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+ "ABpraapp->ABpraappp": 0.761333703994751,
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+ "ABprapap->ABprapapp": 0.761333703994751,
+ "ABprappa->ABprappaa": 0.5572793483734131,
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+ "ABprpapp->ABprpappa": 0.761333703994751,
+ "ABprpapp->ABprpappp": 0.761333703994751,
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+ "ABprppap->ABprppapa": 0.761333703994751,
+ "ABprppap->ABprppapp": 0.761333703994751,
+ "ABprpppa->ABprpppaa": 0.6432212591171265,
+ "ABprpppa->ABprpppap": 0.6432212591171265,
+ "ABprpppp->ABprppppa": 0.6432212591171265,
+ "ABprpppp->ABprppppp": 0.6432212591171265,
+ "MSaaaa->MSaaaaa": 0.761333703994751,
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+ "MSappp->MSapppa": 0.6432212591171265,
+ "MSappp->MSapppp": 0.6432212591171265,
+ "MSpaaa->MSpaaaa": 0.5572793483734131,
+ "MSpaaa->MSpaaap": 0.6432212591171265,
+ "MSpaap->MSpaapa": 0.761333703994751,
+ "MSpaap->MSpaapp": 0.761333703994751,
+ "MSpapa->MSpapaa": 0.6432212591171265,
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+ "MSpapp->MSpappa": 0.6432212591171265,
+ "MSpapp->MSpappp": 0.5572793483734131,
+ "MSppaa->MSppaaa": 0.6432212591171265,
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+ "MSppap->MSppapa": 0.6432212591171265,
+ "MSppap->MSppapp": 0.6432212591171265,
+ "MSpppa->MSpppaa": 0.6432212591171265,
+ "MSpppa->MSpppap": 0.6432212591171265,
+ "MSpppp->MSppppa": 0.761333703994751,
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+ "Eal->Eala": 0.6432212591171265,
+ "Eal->Ealp": 0.6432212591171265,
+ "Ear->Eara": 0.6432212591171265,
+ "Ear->Earp": 0.6432212591171265,
+ "Epl->Epla": 0.5572793483734131,
+ "Epl->Eplp": 0.5572793483734131,
+ "Epr->Epra": 0.6432212591171265,
+ "Epr->Eprp": 0.6432212591171265,
+ "Caaa->Caaaa": 0.5572793483734131,
+ "Caaa->Caaap": 0.5572793483734131,
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+ "Caap->Caapp": 0.6432212591171265,
+ "Capa->Capaa": 0.761333703994751,
+ "Capa->Capap": 0.6432212591171265,
+ "Capp->Cappa": 0.6432212591171265,
+ "Capp->Cappp": 0.6432212591171265,
+ "Cpaa->Cpaaa": 0.5572793483734131,
+ "Cpaa->Cpaap": 0.6432212591171265,
+ "Cpap->Cpapa": 0.6432212591171265,
+ "Cpap->Cpapp": 0.6432212591171265,
+ "Cppa->Cppaa": 0.5572793483734131,
+ "Cppa->Cppap": 0.5572793483734131,
+ "Cppp->Cpppa": 0.5572793483734131,
+ "Cppp->Cpppp": 0.6432212591171265,
+ "Da->Daa": 0.5572793483734131,
+ "Dap->Dapa": 0.6432212591171265,
+ "Dap->Dapp": 0.5572793483734131,
+ "Dp->Dpa": 0.5572793483734131,
+ "Dpp->Dppa": 0.6432212591171265,
+ "Dpp->Dppp": 0.6432212591171265
+ }
+ }
+ ]
+ },
+ "rnai_embryo": {
+ "filename": "CD030906_dyf7red.npz",
+ "timesteps": [
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+ 60,
+ 90,
+ 120,
+ 150,
+ 180
+ ],
+ "data": [
+ {
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+ "ABal->ABalp": 1.0,
+ "ABar->ABara": 1.0,
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+ "ABpl->ABpla": 0.9123597741127014,
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+ "ABpr->ABpra": 0.9123597741127014,
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+ "MS->MSa": 0.9123597741127014,
+ "MS->MSp": 0.9123597741127014,
+ "E->Ea": 1.0,
+ "E->Ep": 0.9123597741127014
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+ {
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+ "ABala->ABalaa": 0.9123597741127014,
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+ "ABalp->ABalpp": 0.9123597741127014,
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+ "ABarap->ABarapp": 0.9123597741127014,
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+ "ABplap->ABplapp": 0.9123597741127014,
+ "ABplp->ABplpa": 0.9123597741127014,
+ "ABplp->ABplpp": 0.9123597741127014,
+ "ABpra->ABpraa": 0.9123597741127014,
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+ "ABprp->ABprpa": 0.9123597741127014,
+ "ABprp->ABprpp": 0.9123597741127014,
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+ "MSa->MSap": 0.9123597741127014,
+ "MSp->MSpa": 0.9123597741127014,
+ "MSp->MSpp": 0.9123597741127014,
+ "E->Ea": 0.9123597741127014,
+ "E->Ep": 0.9123597741127014,
+ "Ca->Caa": 0.9123597741127014,
+ "Ca->Cap": 0.9123597741127014,
+ "Cp->Cpa": 0.9123597741127014,
+ "Cp->Cpp": 0.9123597741127014
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+ {
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+ "ABplaapa->ABalaap": 1.0,
+ "ABplpapa->MSapp": 1.0,
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+ "ABplpapp->MSapp": 1.0,
+ "MSapp->ABplpapp": 1.0,
+ "ABprppp->Cppa": 1.0,
+ "Cppa->ABprppp": 1.0,
+ "ABalaa->ABalaaa": 0.9123597741127014,
+ "ABalaa->ABalaap": 1.0,
+ "ABalap->ABalapa": 0.8292930126190186,
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+ "ABalpaa->ABalpaaa": 0.9123597741127014,
+ "ABalpaa->ABalpaap": 0.9123597741127014,
+ "ABalpap->ABalpapa": 0.9123597741127014,
+ "ABalpap->ABalpapp": 0.9123597741127014,
+ "ABalpp->ABalppa": 0.9123597741127014,
+ "ABalppp->ABalpppa": 0.9123597741127014,
+ "ABalppp->ABalpppp": 0.9123597741127014,
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+ "ABaraap->ABaraapa": 0.9123597741127014,
+ "ABaraap->ABaraapp": 0.9123597741127014,
+ "ABarapa->ABarapaa": 0.9123597741127014,
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+ "ABarpap->ABarpapp": 0.9123597741127014,
+ "ABarppa->ABarppaa": 0.9123597741127014,
+ "ABarppa->ABarppap": 0.9123597741127014,
+ "ABarpp->ABarppp": 0.9123597741127014,
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+ "ABplaap->ABplaapa": 0.9123597741127014,
+ "ABplaap->ABplaapp": 0.8292930126190186,
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+ "ABplapa->ABplapap": 0.8292930126190186,
+ "ABplapp->ABplappa": 0.8292930126190186,
+ "ABplapp->ABplappp": 0.8292930126190186,
+ "ABplpa->ABplpaa": 0.8292930126190186,
+ "ABplpap->ABplpapa": 0.9123597741127014,
+ "ABplpap->ABplpapp": 0.9123597741127014,
+ "ABplpp->ABplppa": 0.8292930126190186,
+ "ABplpp->ABplppp": 0.9123597741127014,
+ "ABpraa->ABpraaa": 0.8292930126190186,
+ "ABpraap->ABpraapa": 0.8292930126190186,
+ "ABpraap->ABpraapp": 0.8292930126190186,
+ "ABprapa->ABprapaa": 0.9123597741127014,
+ "ABprapa->ABprapap": 0.9123597741127014,
+ "ABprap->ABprapp": 0.9123597741127014,
+ "ABprpa->ABprpaa": 0.9123597741127014,
+ "ABprpa->ABprpap": 0.9123597741127014,
+ "ABprpp->ABprppa": 0.9123597741127014,
+ "ABprpp->ABprppp": 0.9123597741127014,
+ "MSaa->MSaaa": 0.8292930126190186,
+ "MSaa->MSaap": 0.8292930126190186,
+ "MSap->MSapa": 0.8292930126190186,
+ "MSap->MSapp": 0.9123597741127014,
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+ "MSpa->MSpap": 0.8292930126190186,
+ "MSpp->MSppa": 0.8292930126190186,
+ "MSpp->MSppp": 0.8292930126190186,
+ "Ea->Eal": 0.8292930126190186,
+ "Ea->Ear": 0.8292930126190186,
+ "Ep->Epl": 0.8292930126190186,
+ "Ep->Epr": 0.8292930126190186,
+ "Caa->Caaa": 0.9123597741127014,
+ "Caa->Caap": 0.9123597741127014,
+ "Cap->Capa": 0.9123597741127014,
+ "Cap->Capp": 0.8292930126190186,
+ "Cpa->Cpaa": 0.8292930126190186,
+ "Cpa->Cpap": 0.8292930126190186,
+ "Cpp->Cppa": 0.9123597741127014,
+ "Cpp->Cppp": 0.8292930126190186,
+ "D->Da": 0.8292930126190186,
+ "D->Dp": 0.8292930126190186
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+ },
+ {
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+ "ABaraaaa->ABalaaaa": 0.9123597741127014,
+ "ABalaapa->ABaraaap": 0.9123597741127014,
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+ "ABalaapa->ABarpaaa": 0.9123597741127014,
+ "ABarpaaa->ABalaapa": 0.9123597741127014,
+ "ABalaapp->MSpaaa": 0.9123597741127014,
+ "MSpaaa->ABalaapp": 0.9123597741127014,
+ "ABalapaa->ABaraapa": 1.0,
+ "ABaraapa->ABalapaa": 1.0,
+ "ABalapaa->MSaaaa": 1.0,
+ "MSaaaa->ABalapaa": 1.0,
+ "ABalappa->MSpaaa": 0.9123597741127014,
+ "MSpaaa->ABalappa": 0.9123597741127014,
+ "ABalappp->ABaraapp": 0.9123597741127014,
+ "ABaraapp->ABalappp": 0.9123597741127014,
+ "ABalpppa->ABplaaaa": 0.9123597741127014,
+ "ABplaaaa->ABalpppa": 0.9123597741127014,
+ "ABalpppp->ABplapaa": 0.9123597741127014,
+ "ABplapaa->ABalpppp": 0.9123597741127014,
+ "ABalpppp->MSaapa": 0.9123597741127014,
+ "MSaapa->ABalpppp": 0.9123597741127014,
+ "ABaraapa->MSaaaa": 1.0,
+ "MSaaaa->ABaraapa": 1.0,
+ "ABarappa->ABpraaap": 0.9123597741127014,
+ "ABpraaap->ABarappa": 0.9123597741127014,
+ "ABarappp->ABpraapa": 0.9123597741127014,
+ "ABpraapa->ABarappp": 0.9123597741127014,
+ "ABarppaa->Eala": 0.9123597741127014,
+ "Eala->ABarppaa": 0.9123597741127014,
+ "ABarppap->Ealp": 0.9123597741127014,
+ "Ealp->ABarppap": 0.9123597741127014,
+ "ABarpppa->MSppap": 0.9123597741127014,
+ "MSppap->ABarpppa": 0.9123597741127014,
+ "ABplaappp->ABplpapp": 0.9123597741127014,
+ "ABplpapp->ABplaappp": 0.9123597741127014,
+ "ABplappp->ABplpppp": 0.9123597741127014,
+ "ABplpppp->ABplappp": 0.9123597741127014,
+ "ABplpaap->ABplpapa": 0.9123597741127014,
+ "ABplpapa->ABplpaap": 0.9123597741127014,
+ "ABpraapp->ABprpaap": 0.9123597741127014,
+ "ABprpaap->ABpraapp": 0.9123597741127014,
+ "ABprappa->ABprppap": 0.9123597741127014,
+ "ABprppap->ABprappa": 0.9123597741127014,
+ "ABprappp->ABprpppp": 0.9123597741127014,
+ "ABprpppp->ABprappp": 0.9123597741127014,
+ "MSppaa->Eara": 0.9123597741127014,
+ "Eara->MSppaa": 0.9123597741127014,
+ "MSpppa->Earp": 0.9123597741127014,
+ "Earp->MSpppa": 0.9123597741127014,
+ "MSpppp->Epra": 0.9123597741127014,
+ "Epra->MSpppp": 0.9123597741127014,
+ "Eprp->Dpa": 0.9123597741127014,
+ "Dpa->Eprp": 0.9123597741127014,
+ "Cpaa->Dpa": 0.9123597741127014,
+ "Dpa->Cpaa": 0.9123597741127014,
+ "ABalaaa->ABalaaaa": 0.9123597741127014,
+ "ABalaaa->ABalaaap": 0.8292930126190186,
+ "ABalaap->ABalaapa": 0.9123597741127014,
+ "ABalaap->ABalaapp": 0.9123597741127014,
+ "ABalapa->ABalapaa": 0.8292930126190186,
+ "ABalapa->ABalapap": 0.8292930126190186,
+ "ABalapp->ABalappa": 0.8292930126190186,
+ "ABalapp->ABalappp": 0.8292930126190186,
+ "ABalpaa->ABalpaaa": 0.8292930126190186,
+ "ABalpaa->ABalpaap": 0.8292930126190186,
+ "ABalpap->ABalpapa": 0.8292930126190186,
+ "ABalpap->ABalpapp": 0.761333703994751,
+ "ABalppa->ABalppaa": 0.8292930126190186,
+ "ABalppa->ABalppap": 0.8292930126190186,
+ "ABalppp->ABalpppa": 0.9123597741127014,
+ "ABalppp->ABalpppp": 0.9123597741127014,
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+ "ABaraaa->ABaraaap": 0.8292930126190186,
+ "ABaraap->ABaraapa": 0.9123597741127014,
+ "ABaraap->ABaraapp": 0.9123597741127014,
+ "ABarapa->ABarapaa": 0.8292930126190186,
+ "ABarapa->ABarapap": 0.8292930126190186,
+ "ABarapp->ABarappa": 0.9123597741127014,
+ "ABarapp->ABarappp": 0.9123597741127014,
+ "ABarpaa->ABarpaaa": 0.9123597741127014,
+ "ABarpaa->ABarpaap": 0.8292930126190186,
+ "ABarpap->ABarpapa": 0.8292930126190186,
+ "ABarpap->ABarpapp": 0.8292930126190186,
+ "ABarppa->ABarppaa": 0.8292930126190186,
+ "ABarppa->ABarppap": 0.8292930126190186,
+ "ABarppp->ABarpppa": 0.9123597741127014,
+ "ABarppp->ABarpppp": 0.8292930126190186,
+ "ABplaaa->ABplaaaa": 0.8292930126190186,
+ "ABplaaa->ABplaaap": 0.8292930126190186,
+ "ABplaap->ABplaapa": 0.8292930126190186,
+ "ABplaapp->ABplaappa": 0.8292930126190186,
+ "ABplaapp->ABplaappp": 0.8292930126190186,
+ "ABplapa->ABplapaa": 0.8292930126190186,
+ "ABplapa->ABplapap": 0.8292930126190186,
+ "ABplapp->ABplappa": 0.8292930126190186,
+ "ABplapp->ABplappp": 0.9123597741127014,
+ "ABplpaa->ABplpaaa": 0.8292930126190186,
+ "ABplpaa->ABplpaap": 0.9123597741127014,
+ "ABplpap->ABplpapa": 0.9123597741127014,
+ "ABplpap->ABplpapp": 0.9123597741127014,
+ "ABplppa->ABplppaa": 0.8292930126190186,
+ "ABplppa->ABplppap": 0.8292930126190186,
+ "ABplppp->ABplpppa": 0.8292930126190186,
+ "ABplppp->ABplpppp": 0.9123597741127014,
+ "ABpraaa->ABpraaaa": 0.8292930126190186,
+ "ABpraaa->ABpraaap": 0.9123597741127014,
+ "ABpraap->ABpraapa": 0.9123597741127014,
+ "ABpraap->ABpraapp": 0.9123597741127014,
+ "ABprapa->ABprapaa": 0.761333703994751,
+ "ABprapa->ABprapap": 0.761333703994751,
+ "ABprapp->ABprappa": 0.9123597741127014,
+ "ABprapp->ABprappp": 0.9123597741127014,
+ "ABprpaa->ABprpaaa": 0.8292930126190186,
+ "ABprpaa->ABprpaap": 0.9123597741127014,
+ "ABprpap->ABprpapa": 0.8292930126190186,
+ "ABprpap->ABprpapp": 0.8292930126190186,
+ "ABprppa->ABprppaa": 0.8292930126190186,
+ "ABprppa->ABprppap": 0.9123597741127014,
+ "ABprppp->ABprpppa": 0.8292930126190186,
+ "ABprppp->ABprpppp": 0.9123597741127014,
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+ "MSapp->MSappa": 0.8292930126190186,
+ "MSapp->MSappp": 0.8292930126190186,
+ "MSpaa->MSpaaa": 0.9123597741127014,
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+ "MSpap->MSpapp": 0.8292930126190186,
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+ "MSppp->MSpppa": 0.9123597741127014,
+ "MSppp->MSpppp": 0.9123597741127014,
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+ "Eal->Ealp": 0.9123597741127014,
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+ "Caa->Caaa": 0.8292930126190186,
+ "Caa->Caap": 0.761333703994751,
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+ "Cpa->Cpaa": 0.8292930126190186,
+ "Cpa->Cpap": 0.8292930126190186,
+ "Cpp->Cppa": 0.8292930126190186,
+ "Cpp->Cppp": 0.8292930126190186,
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+ "Da->Dap": 0.8292930126190186,
+ "Dp->Dpa": 0.8292930126190186,
+ "Dp->Dpp": 0.8292930126190186
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+ },
+ {
+ "timestep": 150,
+ "attentions": {
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+ {
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+ "ABplppaap->ABplppaapp": 0.4652247428894043,
+ "ABplppapa->ABplppapaa": 0.4652247428894043,
+ "ABplppapa->ABplppapap": 0.4652247428894043,
+ "ABplppap->ABplppapp": 0.40993422269821167,
+ "ABplpppaa->ABplpppaaa": 0.4652247428894043,
+ "ABplpppaa->ABplpppaap": 0.4652247428894043,
+ "ABplpppap->ABplpppapa": 0.4652247428894043,
+ "ABplpppap->ABplpppapp": 0.4652247428894043,
+ "ABplppppa->ABplppppaa": 0.4652247428894043,
+ "ABplppppa->ABplppppap": 0.4652247428894043,
+ "ABplppppp->ABplpppppa": 0.4652247428894043,
+ "ABplppppp->ABplpppppp": 0.40993422269821167,
+ "ABpraaaa->ABpraaaaa": 0.40993422269821167,
+ "ABpraaaap->ABpraaaapa": 0.5572793483734131,
+ "ABpraaaap->ABpraaaapp": 0.5572793483734131,
+ "ABpraaapa->ABpraaapaa": 0.4652247428894043,
+ "ABpraaapa->ABpraaapap": 0.4652247428894043,
+ "ABpraaapp->ABpraaappa": 0.4652247428894043,
+ "ABpraaapp->ABpraaappp": 0.4652247428894043,
+ "ABpraapaa->ABpraapaaa": 0.4652247428894043,
+ "ABpraapaa->ABpraapaap": 0.4652247428894043,
+ "ABpraapap->ABpraapapa": 0.5572793483734131,
+ "ABpraapap->ABpraapapp": 0.5572793483734131,
+ "ABpraappa->ABpraappaa": 0.5572793483734131,
+ "ABpraappa->ABpraappap": 0.5572793483734131,
+ "ABpraappp->ABpraapppa": 0.5572793483734131,
+ "ABpraappp->ABpraapppp": 0.40993422269821167,
+ "ABprapaaa->ABprapaaaa": 0.4652247428894043,
+ "ABprapaaa->ABprapaaap": 0.4652247428894043,
+ "ABprapaa->ABprapaap": 0.40993422269821167,
+ "ABprapapa->ABprapapaa": 0.4652247428894043,
+ "ABprapapa->ABprapapap": 0.4652247428894043,
+ "ABprapapp->ABprapappa": 0.40993422269821167,
+ "ABprapapp->ABprapappp": 0.40993422269821167,
+ "ABprappaa->ABprappaaa": 0.4652247428894043,
+ "ABprappaa->ABprappaap": 0.4652247428894043,
+ "ABprappap->ABprappapa": 0.4652247428894043,
+ "ABprappap->ABprappapp": 0.4652247428894043,
+ "ABprappp->ABprapppa": 0.4652247428894043,
+ "ABprappp->ABprapppp": 0.40993422269821167,
+ "ABprpaaaa->ABprpaaaaa": 0.5572793483734131,
+ "ABprpaaaa->ABprpaaaap": 0.5572793483734131,
+ "ABprpaaap->ABprpaaapa": 0.4652247428894043,
+ "ABprpaaap->ABprpaaapp": 0.4652247428894043,
+ "ABprpaapa->ABprpaapaa": 0.4652247428894043,
+ "ABprpaapa->ABprpaapap": 0.4652247428894043,
+ "ABprpaapp->ABprpaappa": 0.4652247428894043,
+ "ABprpaapp->ABprpaappp": 0.4652247428894043,
+ "ABprpapa->ABprpapaa": 0.40993422269821167,
+ "ABprpapap->ABprpapapa": 0.4652247428894043,
+ "ABprpapap->ABprpapapp": 0.4652247428894043,
+ "ABprpappa->ABprpappaa": 0.4652247428894043,
+ "ABprpappa->ABprpappap": 0.4652247428894043,
+ "ABprpappp->ABprpapppa": 0.4652247428894043,
+ "ABprpappp->ABprpapppp": 0.4652247428894043,
+ "ABprppaa->ABprppaaa": 0.5572793483734131,
+ "ABprppaa->ABprppaap": 0.40993422269821167,
+ "ABprppapa->ABprppapaa": 0.5572793483734131,
+ "ABprppapa->ABprppapap": 0.5572793483734131,
+ "ABprppap->ABprppapp": 0.40993422269821167,
+ "ABprpppaa->ABprpppaaa": 0.40993422269821167,
+ "ABprpppaa->ABprpppaap": 0.40993422269821167,
+ "ABprpppap->ABprpppapa": 0.5572793483734131,
+ "ABprpppap->ABprpppapp": 0.5572793483734131,
+ "ABprppppa->ABprppppaa": 0.6432212591171265,
+ "ABprppppa->ABprppppap": 0.40993422269821167,
+ "ABprppppp->ABprpppppa": 0.5572793483734131,
+ "ABprppppp->ABprpppppp": 0.5572793483734131,
+ "MSaaaaa->MSaaaaaa": 0.5572793483734131,
+ "MSaaaaa->MSaaaaap": 0.5572793483734131,
+ "MSaaaap->MSaaaapa": 0.5572793483734131,
+ "MSaaaap->MSaaaapp": 0.40993422269821167,
+ "MSaaapa->MSaaapaa": 0.5572793483734131,
+ "MSaaapa->MSaaapap": 0.5572793483734131,
+ "MSaaap->MSaaapp": 0.40993422269821167,
+ "MSaapaa->MSaapaaa": 0.5572793483734131,
+ "MSaapaa->MSaapaap": 0.5572793483734131,
+ "MSaapa->MSaapap": 0.40993422269821167,
+ "MSaapp->MSaappa": 0.5572793483734131,
+ "MSaapp->MSaappp": 0.5572793483734131,
+ "MSapaa->MSapaaa": 0.5572793483734131,
+ "MSapaa->MSapaap": 0.5572793483734131,
+ "MSapap->MSapapa": 0.5572793483734131,
+ "MSapap->MSapapp": 0.5572793483734131,
+ "MSappa->MSappaa": 0.4652247428894043,
+ "MSappa->MSappap": 0.4652247428894043,
+ "MSappp->MSapppa": 0.4652247428894043,
+ "MSappp->MSapppp": 0.4652247428894043,
+ "MSpaaaa->MSpaaaaa": 0.4652247428894043,
+ "MSpaaaa->MSpaaaap": 0.40993422269821167,
+ "MSpaaap->MSpaaapa": 0.4652247428894043,
+ "MSpaaap->MSpaaapp": 0.4652247428894043,
+ "MSpaap->MSpaapa": 0.4652247428894043,
+ "MSpaap->MSpaapp": 0.4652247428894043,
+ "MSpapaa->MSpapaaa": 0.6432212591171265,
+ "MSpapaa->MSpapaap": 0.6432212591171265,
+ "MSpapa->MSpapap": 0.40993422269821167,
+ "MSpapp->MSpappa": 0.4652247428894043,
+ "MSpapp->MSpappp": 0.4652247428894043,
+ "MSppaa->MSppaaa": 0.4652247428894043,
+ "MSppaa->MSppaap": 0.4652247428894043,
+ "MSppap->MSppapa": 0.6432212591171265,
+ "MSppap->MSppapp": 0.6432212591171265,
+ "MSpppa->MSpppaa": 0.6432212591171265,
+ "MSpppa->MSpppap": 0.6432212591171265,
+ "MSpppp->MSppppa": 0.6432212591171265,
+ "MSpppp->MSppppp": 0.6432212591171265,
+ "Eala->Ealaa": 0.5572793483734131,
+ "Eala->Ealap": 0.40993422269821167,
+ "Ealp->Ealpa": 0.5572793483734131,
+ "Ealp->Ealpp": 0.5572793483734131,
+ "Eara->Earaa": 0.5572793483734131,
+ "Eara->Earap": 0.40993422269821167,
+ "Earp->Earpa": 0.5572793483734131,
+ "Earp->Earpp": 0.5572793483734131,
+ "Epla->Eplaa": 0.5572793483734131,
+ "Epla->Eplap": 0.40993422269821167,
+ "Epl->Eplp": 0.40993422269821167,
+ "Epra->Epraa": 0.5572793483734131,
+ "Epra->Eprap": 0.5572793483734131,
+ "Eprp->Eprpa": 0.40993422269821167,
+ "Eprp->Eprpp": 0.5572793483734131,
+ "Caaaa->Caaaaa": 0.40993422269821167,
+ "Caaaa->Caaaap": 0.5572793483734131,
+ "Caaap->Caaapa": 0.40993422269821167,
+ "Caaap->Caaapp": 0.6432212591171265,
+ "Caap->Caapa": 0.6432212591171265,
+ "Caap->Caapp": 0.40993422269821167,
+ "Capa->Capaa": 0.6432212591171265,
+ "Capa->Capap": 0.40993422269821167,
+ "Capp->Cappa": 0.6432212591171265,
+ "Capp->Cappp": 0.40993422269821167,
+ "Cpaaa->Cpaaaa": 0.40993422269821167,
+ "Cpaaa->Cpaaap": 0.6432212591171265,
+ "Cpaap->Cpaapa": 0.40993422269821167,
+ "Cpaap->Cpaapp": 0.40993422269821167,
+ "Cpapa->Cpapaa": 0.5572793483734131,
+ "Cpapa->Cpapap": 0.40993422269821167,
+ "Cpapp->Cpappd": 0.5572793483734131,
+ "Cpapp->Cpappv": 0.40993422269821167,
+ "Cppa->Cppaa": 0.5572793483734131,
+ "Cppa->Cppap": 0.5572793483734131,
+ "Cppp->Cpppa": 0.5572793483734131,
+ "Cppp->Cpppp": 0.40993422269821167,
+ "Daa->Daaa": 0.5572793483734131,
+ "Daa->Daap": 0.5572793483734131,
+ "Dap->Dapa": 0.5572793483734131,
+ "Dap->Dapp": 0.5572793483734131,
+ "Dpa->Dpaa": 0.5572793483734131,
+ "Dpa->Dpap": 0.5572793483734131,
+ "Dpp->Dppa": 0.5572793483734131,
+ "Dpp->Dppp": 0.5572793483734131
+ }
+ }
+ ]
+ }
+}
\ No newline at end of file
diff --git a/Spatio-Temporal-Evolution/dashboard/index.html b/Spatio-Temporal-Evolution/dashboard/index.html
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+
+
+ ESTGEL 3D Embryo Development & Attention Dashboard
+
+
+
+
+
+
+
+
+
+
+
+
+
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+
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+
Embryo Growth Profile
+
+
+
+
+
+
EAM Attention Contrast (WT vs. RNAi)
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+
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+